Protein Info for mRNA_3979 in Rhodosporidium toruloides IFO0880

Name: 12347
Annotation: K07119 K07119 uncharacterized protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF16884: ADH_N_2" amino acids 8 to 117 (110 residues), 90.3 bits, see alignment E=1.1e-29 PF00107: ADH_zinc_N" amino acids 166 to 299 (134 residues), 76.5 bits, see alignment E=3e-25 PF13602: ADH_zinc_N_2" amino acids 199 to 340 (142 residues), 36.4 bits, see alignment E=1.6e-12

Best Hits

KEGG orthology group: K07119, (no description) (inferred from 47% identity to fgr:FG03238.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>mRNA_3979 K07119 K07119 uncharacterized protein (Rhodosporidium toruloides IFO0880)
MAAPSTTKVWTLQHKPRGPVTADTFALENKPLRPLNDGEILVKLVYLSNDPAQRTWIDPS
VVKERAYGPAPDEGDAMPSGFVGKVVQSKSASWKEGDLVNGLGSWSEYLVLNEKAVFPAR
TLEGYPTSIALSALGMTTLTAYCGLHEVGHVKPEHTVVISGAAGATGSAAVQIAKNIVGC
KRVVGIAGGPEKCAWVKKLGADECLDYRSPSFEDDLVKATDGYVDVYFDNVGGSILNSMF
KRMKRFSRIIACGAISGYNSRETVNMNNIFEVISMRITMQGFIVSDFMAQWPAAIEAVKK
AIKEGKFTTEGTETLVKAQFDEVPQVWQRLFSGQNQGKLVTQLES