Protein Info for mRNA_3980 in Rhodosporidium toruloides IFO0880

Name: 12348
Annotation: KOG1196 Predicted NAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF16884: ADH_N_2" amino acids 26 to 114 (89 residues), 78.1 bits, see alignment E=4.5e-26 PF00107: ADH_zinc_N" amino acids 167 to 291 (125 residues), 66.3 bits, see alignment E=2.9e-22

Best Hits

KEGG orthology group: K07119, (no description) (inferred from 43% identity to lbc:LACBIDRAFT_185826)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>mRNA_3980 KOG1196 Predicted NAD-dependent oxidoreductase (Rhodosporidium toruloides IFO0880)
MVQIDALIFNEIPKGKPIPGQTLKKVQQELDLDAPLQDGEILVKTTALSLDPYQRGRMRP
EEVESYVPAFKLGQPIDNFGVGEVVKSSNSQFQKGQRVYGYLKFQTYQVVSKEATAGLRV
LENKEGLPWTNWVGAAGMPGQTAWYAIEKLSGLKKGESVFISGAMGPVGQLAIALAHKIG
AKVVASAGSKEKCDFLKNELKVERVFNYKEEDPNQVLAAWNKEQGKPFEVYIDNVAGPQL
EAALNHIGKRGRIVAIGAINDYNGEPYGIKNIFYVVGKELRYEGFIILNRMTPELFKEFY
SEIPPALASGEFAKPKEHIFNGLDNGEAFASLFDSQNSNFGKAVISLE