Protein Info for mRNA_3994 in Rhodosporidium toruloides IFO0880

Name: 12362
Annotation: K11484 HOS3 histone deacetylase HOS3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 803 PF00850: Hist_deacetyl" amino acids 263 to 592 (330 residues), 153.3 bits, see alignment E=5.7e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (803 amino acids)

>mRNA_3994 K11484 HOS3 histone deacetylase HOS3 (Rhodosporidium toruloides IFO0880)
MDSPSPGDSTTANESYATASQASDDLVLAESLLSLSLNHGTQTGSTAPGLAGGAPVKEEA
ITAELPTEQLPAASTVDTSTPSVAPPRPRRPRTAVTLQPACANHRYIRNTDIGTIVERPE
RLRAVKVGVAAAWARLEEREVAQGGERWRPIEAKEVDQDSELDALLGGLSIGGAGKTSVE
TRRRKREVVGGPFDILESSAVLALDNSALRYIHSKPNLSPDDEANEAAWTSASSDSSPDP
PSAPVTGPTPRAPAAPPAWPTQLQRLCRQSASAVQQPPHSEIPAHLPQGDLYLCPGSEEA
IFGALGAVCEGVDRLVAGGQDAEQVYDRAFVSIRPPGHHCGEANPQGFCFVNNVAVAAAH
AHLKHGINRVVILDIDLHHGNGTQEVAWLMNAEANRILTERRAKTPSASPRKGTGSSPKK
TQAPLPAPTAQPRPLQIMYASLHDIWSYPCEDGDPGLVAAASTNLAGGHGQWISNVHLEA
WRDEQHFHNELYPMYREGLLGRAEEFCRKVEEEGEVAGEKTLVIVSAGFDASEHESAGMS
RHLRNVPTSFYRRFARDTVEFAAFVARGKVLAVLEGGYSDRALASSTASFLTGLVSASGS
ADPQDPPASVEEDAWWTGATLKKLEKACSVAKSRRAAAPPTLVGVDASAEPWLSRSVDIF
SQLEDIAAASSKASTSAVTTGQTDTSPTTSRQLRERRARPNYAGLDDGSTPLPSPTRSTA
IQPRRMASSSRLKAEKSGPPDLPPPVPTLPVPPTPEATIYPPPSSESTVYDAPTAAPPPP
PPPSKQMIRFTWKEGGFSGPPRM