Protein Info for mRNA_3999 in Rhodosporidium toruloides IFO0880

Name: 12367
Annotation: KOG1341 Na+/K+ transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1014 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 73 to 96 (24 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 562 to 583 (22 residues), see Phobius details amino acids 631 to 658 (28 residues), see Phobius details amino acids 684 to 710 (27 residues), see Phobius details amino acids 732 to 751 (20 residues), see Phobius details amino acids 758 to 776 (19 residues), see Phobius details amino acids 822 to 840 (19 residues), see Phobius details amino acids 852 to 872 (21 residues), see Phobius details amino acids 878 to 898 (21 residues), see Phobius details TIGR00934: potassium uptake protein, Trk family" amino acids 34 to 916 (883 residues), 598.3 bits, see alignment E=1.4e-183 PF02386: TrkH" amino acids 521 to 918 (398 residues), 382.3 bits, see alignment E=1.6e-118

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1014 amino acids)

>mRNA_3999 KOG1341 Na+/K+ transporter (Rhodosporidium toruloides IFO0880)
MRRRLSLDRHPSTAARLPPFLERSSVWNRISAFSSAHLNFYRLHLLAFTFLPLIASGIFF
ASNGPSQANQIPYIDALFMCTSAMTLTGLNTALFANLTVWQQFILFFLMSIGSTSFVSMI
TIVIRRHFFRNKFAYMVAHDEEARMRVNEVGEGEAARHGRSYHAFDNAHRPTRPWYARLI
PLGRRTGEPPAAAHANGSPGDERGEQWTAKDRERSRRRTEKLRTDMIKRVDTPVRVNEMS
VSGWLGDEKAGDGKEGEGGRGAPNGDGGQAKKPIHEVREAQSAQGLPQVHSREASSDRGE
GDLPPTVQAAQASIEEGSADAAGHARAIQIDESTRPDRRARQRRNSDSIATTPTRAAGAT
LPRNHTLDHRHLGHVGATFPAHPRSSSPARQQRDFNVGRSRTIDFRDPDGAGDLRLRRNR
TQAFDPDYPIRRRMSQSSLHDANPRAFTRTVTLDQSAMHSDFGGFPNPLFAAASFAKDKI
PGLRNVVDRTATLPRTMTMRSTHSHGRSPSRRRTSDGEVKPVSYISFDAIVGRNSKFHGL
TTAQQEELGGVEYRALTVLLRIVFAYWLGVQLLAVLAVAPWLAMTQPWKSTISAAGPDPT
WFSFFQVWSAYSNCGMSLDDASMVPFQKAYGLVIVQGLLILAGNTAFPVFLRLLIWIVSK
AVPSRSRTRETLQFLLDHPRRCFIYLFPSYQTWFLVFMLVCLNGVDWASFLVLDIGNPQI
EALPTGVRVIDGLFQAVAVRTAGFAIVSLSTVAPALQLLYVIMMYIAVYPIAVSIRSTNV
YEEKSMGVYDEDFEEDPDEAEARFDKSHSATQYIGYHARKQLAFDLWWLALAVWLICIVE
RHRIGSSDWPEVTIFSLIFEIVSAYGTVGLSLGNNRTATSLAGVLSTLSKLIVCAVMLRG
RHRGLPIAIDRAVLLPSDLEKHGDDTMTVNSGEGAPGELGRRTRTSFSSHTAVAGGGLQA
VEPLTDKNRLHRLRRTSGARQDDVNGDAEAGVGRPSSLNGSKEGIAGSEASHEP