Protein Info for mRNA_4004 in Rhodosporidium toruloides IFO0880

Name: 12372
Annotation: KOG1341 Na+/K+ transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 73 to 97 (25 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 575 to 597 (23 residues), see Phobius details amino acids 619 to 633 (15 residues), see Phobius details amino acids 646 to 675 (30 residues), see Phobius details amino acids 708 to 729 (22 residues), see Phobius details amino acids 749 to 768 (20 residues), see Phobius details amino acids 773 to 792 (20 residues), see Phobius details amino acids 838 to 856 (19 residues), see Phobius details amino acids 868 to 889 (22 residues), see Phobius details amino acids 895 to 914 (20 residues), see Phobius details TIGR00934: potassium uptake protein, Trk family" amino acids 33 to 932 (900 residues), 607.6 bits, see alignment E=2.2e-186 PF02386: TrkH" amino acids 67 to 135 (69 residues), 24.9 bits, see alignment 3.6e-10 amino acids 505 to 934 (430 residues), 382.1 bits, see alignment E=1.9e-118

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1053 amino acids)

>mRNA_4004 KOG1341 Na+/K+ transporter (Rhodosporidium toruloides IFO0880)
MRRRVSLNRHPSTAPRIPGFLQRSSLWSRISAFSSAHLNFYRLHLLVFTFVPLIASGIFF
ASNGPSDENQIPYIDALFMCTSAMTVTGLNTVVLSALTVWQQVMLFLLMTIGSTSFVSLI
VIVIRRQFFRNKFEYMVANDAEARKRVNEVGEQEAARAGRAYRAFDASHRPGHTPWYSDF
LPGQHSAAPSPRPSPFNSAAPTRQDGEDEERQREKERKKRKKRKGEKLRTDMIKRVDVPV
RVNKMNVSGWLGDEKHEGEQRMDEEAHEMEKVEEAQRAEEEAPAGARGAERTQDLPEVFS
DDDQDEEEAPPSVHRHDGELADSPRPASPEPVERANGVAGHTRAIQIDTSSRPDRGGRGR
RSSDSVAAAASRAPGVGLPRTRTFDHRHLDGITESPSPLQSPSSPTFRNRDLDVGRTRTI
EFRDPSEAGDLRLRRNRTHAVDPDYPVTRRMSQSNLRDRTFTRTTTVDQAAMHTGFGGFP
NPIYAAASLAKSKIPALRNAVERTSTMPRTTTMLSTHSHGGTSSGGVKHEGTGNFKPVSY
ITFDAVVGRNSKFHGLTTAQQEELGGVEYRALTVLLRIVFAYWLGVQLLAVLLLAPWLST
SERWAPITRESNANPTWFTFFQVWSAYSNLGMSLVDTSMIPFQRAYWLIIVQGFLILAGN
TAFPVFLRLLIWTVYKVMPSRSRTRETLQFLLDHPRRCFIYLFPSHQTWFLVFMLVCLNG
IDWASFLILDIGNPEIEALPTGVRVIDGLLQAFAVRAAGFSIVPLASVAPALQLLYVIMM
YIAVYPIAVSIRSTNVYEEKSMGVYDDDFDEDPDQMEARFDKSHSATEYISYHARKQLAF
DLWWLGLAVWLICIVERHRIGSTDWPEVSIFTLIFEIVSAYGTVGLSLGNNHNNASLAGV
LSTLSKLIICAVMVRGRHRGLPIAIDRAVLLPSDLEKHGDDTATTFSVDNPGREPSLRTR
RTRTSFSSHTAVTAGGLQAVEPLTDEDRFERSRRFSDDQHDVGNGELATGSSPSDSKDSA
LDAEDSSLSTADDAPQGANGEAPPLNRNQTGWV