Protein Info for mRNA_4007 in Rhodosporidium toruloides IFO0880

Name: 12375
Annotation: K12373 HEXA_B hexosaminidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF14845: Glycohydro_20b2" amino acids 19 to 159 (141 residues), 55 bits, see alignment E=1.5e-18 PF00728: Glyco_hydro_20" amino acids 189 to 521 (333 residues), 295.4 bits, see alignment E=7.5e-92

Best Hits

KEGG orthology group: K12373, hexosaminidase [EC: 3.2.1.52] (inferred from 50% identity to cci:CC1G_03425)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.52

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>mRNA_4007 K12373 HEXA_B hexosaminidase (Rhodosporidium toruloides IFO0880)
MLFSTLLPLSLLVTRAAALWPRPRSSSTGSSFIKLGDSFKVVVARCELAKELERALAMAL
ARTSKHLQHDRLRRLTPDRGESDRSQLENAPILSRLSLSLNSTVVGTLADEVANLYTLDE
SYSLSVPAATDLTSPTASAHLTARTLVGLLRGLETFTQLVYFLPAADETVNGSRYIASVP
LRIEDGPAFPYRGFMLDTARNWYPVEDILRTLDTMASTKLSTFHWHITDQQSFPLEIPTF
PDLATYGAYSADQVYSTVDVTKVVEYGRGLGIAVMLEVDMPGHTASIANAYPEHIACLDA
RPWSTYAAEPPAGQLRLGRPDTLAFSKRVLQNAAKLSSSAFFSSGGDEMNERCYLDDPET
KTALEARNATVDELLGEFVRGLHDTLLVSDKTPVVWEELVLKHDLGLANETVVMVWIDSA
NVRAVADKGHRVIHAASDYFYLDCGAGAWLGRYPNGTSWCDPFKIWSKSYSFNPLFNLTR
EQHKLVLGGEALLWSEQAGPENLDSIAWPRAAAAAEVFWTGGSVKEGERSVGEALPRLHD
WRYRAVQRGVKAIPLQPHWCALRPGQCDVEL