Protein Info for mRNA_4013 in Rhodosporidium toruloides IFO0880

Name: 12381
Annotation: HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 PF17124: ThiJ_like" amino acids 23 to 148 (126 residues), 30.6 bits, see alignment E=2.8e-11 PF01965: DJ-1_PfpI" amino acids 29 to 227 (199 residues), 59.7 bits, see alignment E=3.2e-20

Best Hits

KEGG orthology group: None (inferred from 52% identity to mgr:MGG_01679)

Predicted SEED Role

"ThiJ/PfpI family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>mRNA_4013 HMMPfam-DJ-1/PfpI family-PF01965,HMMPfam-N-terminal domain of DJ-1_PfpI family-PF13587,SUPERFAMILY--SSF52317 (Rhodosporidium toruloides IFO0880)
MAANKNILFVLTSHDKFLSGKPTGWYLPEAAHPYYVFKNAGYTITFASPKGGKAPLDPSS
VEMFKEDEEATKFLNDPEAKQLYENTKKLVDVKADDYASVLYVGGHGPVLDLTTNQDSIA
LIHSFLSANKPIAALCHAPTVLLNCQDPKTGEALVKGKKVTCFSDEEEKQAGLVDEIPFL
VETRLRALGADFQNSRQPWGEEVCEDGLVITGANPASAGAMAKKLLARLGN