Protein Info for mRNA_4019 in Rhodosporidium toruloides IFO0880

Name: 12387
Annotation: K15116 SLC25A33_36, RIM2 solute carrier family 25, member 33/36

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 162 to 178 (17 residues), see Phobius details PF00153: Mito_carr" amino acids 40 to 147 (108 residues), 80.7 bits, see alignment E=3.1e-27 amino acids 156 to 294 (139 residues), 56.6 bits, see alignment E=9.9e-20 amino acids 308 to 392 (85 residues), 56.4 bits, see alignment E=1.1e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>mRNA_4019 K15116 SLC25A33_36, RIM2 solute carrier family 25, member 33/36 (Rhodosporidium toruloides IFO0880)
MTGAIEAVQHPHASNPALTVPLGQPLPPPPNRPSKRPKPPPVVHLVAGGAGGMCGAIVTA
PFDVVKTRLQSDLFAHKAAEAGKQTVQRTGARGLLWNFVDTGKIMRDIAKNEGPRALFKG
LGPTLAGAVPARSINFFVYGNGKHLYAEWFNGGKENTAVHLAAAATAGVATAAATNPIWV
VKTDMQLRHQQRQFASSSPSAPPAGPSTPTSSSKRPLPTPPKPAKQIFSHSFRSASSPVL
PMQGPPPRPTSWSTTVDIFRSQGVKGFYRGLSASLLGVTEGTIQWSLYEQFKRIAKAGQA
PGEEDAGWRVSAAAGSAKFVATVITYPHEVVRTRLRQPLPPSGVAKYKSLGQTFKLVIKE
EGWRACYHGLTAHLMRVIPNACCMYLVYEMIVANAEKRIGAKFDEEQAARRD