Protein Info for mRNA_4020 in Rhodosporidium toruloides IFO0880

Name: 12388
Annotation: KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 79 to 101 (23 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 311 to 337 (27 residues), see Phobius details amino acids 349 to 365 (17 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details amino acids 414 to 437 (24 residues), see Phobius details amino acids 445 to 467 (23 residues), see Phobius details amino acids 480 to 503 (24 residues), see Phobius details PF07690: MFS_1" amino acids 87 to 465 (379 residues), 111.1 bits, see alignment E=3.1e-36

Best Hits

Swiss-Prot: 30% identical to YN43_SCHPO: Uncharacterized transporter C36.03c (SPBC36.03c) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 41% identity to scm:SCHCODRAFT_54727)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>mRNA_4020 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MHPSPPSPAATVHTLVDSDMDLAPAAPPLAKSLSRRSQLDVVDPEERAALEAPPDVIWVD
WDGPDDPANPLNWSRRRKWIISSVGILFCALVSLSVSGYSIAEASVQAELNCSKELALLG
ITLFTITFGTAPLLLAPLSEVYGRSYIYLASAIIFAVFFIPQALAKNIETVLVSRFISGI
AGSTAVSLVGGTLADVWRGEDRGTPMAWFSFSAFGATGLGPVAFGYVAQLKGFRYVSWIL
LAVSSFFALILPFILDETRASVLLSRKAARLRKETGDERYQSKDDFERGSLREMMSTSLG
RPVQMLLREPVLIAITAWISFTWGVLYLFLVSIPYVYSKVYHFNTGEAGVVYIVQFIGSA
LGMAYDQWCSHYYRRNVEKRGPEARLYSAFGGGVFVPLGAFIFCFTSYPQCHWIGSAVGI
VILYIGMFLTYLTAFAYLADAYTLYASSALSAMSFVRNCVGAVFPLFTQSMYDRLGIQGA
TGLTAGLGTLLSVTPFILFIYGARLRARSPFAKELARREAEERAKREQGRSGEGSPCRSG
EKTLDKEEAV