Protein Info for mRNA_4021 in Rhodosporidium toruloides IFO0880

Name: 12389
Annotation: KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 transmembrane" amino acids 69 to 91 (23 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 376 to 398 (23 residues), see Phobius details amino acids 404 to 425 (22 residues), see Phobius details amino acids 434 to 457 (24 residues), see Phobius details amino acids 470 to 492 (23 residues), see Phobius details PF07690: MFS_1" amino acids 76 to 455 (380 residues), 106.5 bits, see alignment E=7.3e-35

Best Hits

Swiss-Prot: 32% identical to MRR1_MONRU: Citrinin biosynthesis cluster MFS transporter mrr1 (mrr1) from Monascus ruber

KEGG orthology group: None (inferred from 39% identity to scm:SCHCODRAFT_50448)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>mRNA_4021 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MTATDSPPAPAADDATLRLEPTSSRRSHLDIVDPDERAAEKAPPDVVWVDWDGPDDPANP
LNWSRRRKWVISSVGSFFCTLVSLSVSGYSIAEVSVEEELDTSKTLSLLGLTTFTLAFAI
APLILAPLSEVYGRSFIYFASAVVFALFFIPQALAKNIETVLIARFISGCAGSTAVSIAG
GTFADVWRGADRGAPMAFFTLAAVAGPGLGPVMFGYLAQIKGFPYLSWVLFAMSSVFALS
LPFILDETRASVLLSRKAARLRKETGDERYQSKDDFERGSIRELMKTSLGRPVQMLMREP
VLIAITAWISFTWGVLYLFLVSIPTVYKGVFGFNTGQAGLVYMGQFVGGSLGMIFDRYCE
RFYQRNVAKRGPEARLYSAFGGGIFLPVGAFIFCFTSYPQCHWMGSVVGVVILYAGVYLS
YLAAYSYLAEAYTLYAASALSAMSFARNVIAAVFPLFTPAMYDRLGVQGATGLTAGLDTL
LSVTPFVLFAFGGRLRLRSPFAMELARREEADRVKWAALKGDGTLEDSRDRSEEKLGKET
TETAV