Protein Info for mRNA_4033 in Rhodosporidium toruloides IFO0880

Name: 12401
Annotation: K17675 SUPV3L1, SUV3 ATP-dependent RNA helicase SUPV3L1/SUV3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 PF00271: Helicase_C" amino acids 247 to 349 (103 residues), 46.9 bits, see alignment E=5e-16 PF18147: Suv3_C_1" amino acids 461 to 501 (41 residues), 45.2 bits, see alignment 1e-15 PF12513: SUV3_C" amino acids 560 to 606 (47 residues), 61.9 bits, see alignment 6.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>mRNA_4033 K17675 SUPV3L1, SUV3 ATP-dependent RNA helicase SUPV3L1/SUV3 (Rhodosporidium toruloides IFO0880)
MDEVAKTYIEEGPEEALWNASLAAFLAWVRTNVAVPPVQPNSSQSISTVTKLHLLASIAD
RRFAYEQYFSARQRRRKLILHVGPTNSGKTYNALVALARARTGAYAGPLRLLAHEVFTRF
NEGKIGQEGKRVCNLVTGEEKRIVDPEAGLQSCTVEMFPLQKRLEVGVIDEIQMIGDPQR
GAAWTAAVIGSTCDELHLCGEESVVELIQTIAAELGDECIVKRYQRLSPLVVAEKSLEGD
LSKIRRGDCLVTFSRSNIFAFKRAVEQRTGLKVAVAYGGLPPEVREEQARAFNAGEFDVL
VASDAVGMGLNLKIRRIVFESVHKFDGKNEIRLPTPQVKQIAGRAGRYGVHTPVSPSAPD
FDPVEAGEAEDGKKAEQESTLGEVTTLDASDLPILREAMKEPIVQVRQASITAPPEAYKE
LYSILPASTPLSRVVSLSRAMTRTMPHYRSTGTGGIAFNTDTIAHIRPLTFEERYTFGLA
PVNKRDAYVVESLMDFASSYAAGEPVFVDDWADKSGLFGLLERVDEAHAMRAELLADENA
PKPTGDVKRSLISVFSPVTLSSLESNHRCLTLYLWLSYRLAPIFCDQKGARELRKRVEKA
IETTLDGIKFERSDRSSGAKHKRAVASGMRV