Protein Info for mRNA_4069 in Rhodosporidium toruloides IFO0880

Name: 12437
Annotation: K05288 PIGO phosphatidylinositol glycan, class O

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1129 transmembrane" amino acids 46 to 66 (21 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details amino acids 558 to 578 (21 residues), see Phobius details amino acids 590 to 609 (20 residues), see Phobius details amino acids 620 to 640 (21 residues), see Phobius details amino acids 660 to 678 (19 residues), see Phobius details amino acids 684 to 702 (19 residues), see Phobius details amino acids 712 to 731 (20 residues), see Phobius details amino acids 751 to 771 (21 residues), see Phobius details amino acids 783 to 805 (23 residues), see Phobius details amino acids 830 to 853 (24 residues), see Phobius details amino acids 874 to 898 (25 residues), see Phobius details amino acids 904 to 922 (19 residues), see Phobius details amino acids 965 to 992 (28 residues), see Phobius details amino acids 1008 to 1033 (26 residues), see Phobius details amino acids 1054 to 1076 (23 residues), see Phobius details amino acids 1088 to 1112 (25 residues), see Phobius details PF01663: Phosphodiest" amino acids 241 to 321 (81 residues), 40.2 bits, see alignment 1.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1129 amino acids)

>mRNA_4069 K05288 PIGO phosphatidylinositol glycan, class O (Rhodosporidium toruloides IFO0880)
MASQAAATSSDAPGSSSVAPATHPRDSALFRARRWLHVLPFLPAGSTYLSALTLLALLHT
IGLLLFTRGFLLTRKALPNVNTCNPTAPSGNLDPSCSLPPTHDKLIFLVVDALRADFVLP
VDEPANPFYSNRIPLPAHLTRTQPTNSFLSHFIADAPTTTLQRLKGMTTGSLPTFIDAGS
NFAGEQADEDNWLGQAKRAGKRIALVGDETWLNVFPRGKDSVWQEGLVWPYDSFDVEDLD
TVDRGVREHLLELLEERRQREWDIVIAHALGLDHAGHRFGAEHRETTRKLRETEQLLRDV
VERMQEDTLLVVVGDHGMTDRGDHGGDSREEVDAALWVYSKTPLTDSTWYKHDLASTRHP
LASLYAAANGSSDLGDRFQLTWREKGLSQATRSVSQIDLVPTIALLLGLPIPFGNLGLPI
PELFFRNVDLPVAPKPSAEAASDKPKRGFFGFASSQPERRDQDTLSPLQTVLQATLLASS
ELSNYLLTYTALPSGKDLVPVIPELSFILEIAKSAYKGAHAPGHSREEMELRALEKFWTF
ERKAREKARLVWARFDPVLMGAGLAVWTGSLVVAWRLANAAKKGPSARFLVGRAVEGGLI
ALAAGLVLSTRGVFKGRPSGLAAAFAAAVGAELAVVFAPSTSPLSLTTRLRGALAQRTPA
SLLPLVAHAALLASNSLTVFEDRIVLYLLATLLSFSLVRGFAAPEARLKNRIVAYSAIAL
VSLRLMSWSTICREEQVPKCHPTFHLTPGSTSSIVVLVLSVAAAIGVPSILRSSLATSKS
DEGVAPAFLGVGIRTLLLGASAYWVADSLLASSSFGTAGTAVASLAKTAFARAALVGGFL
SATLVWYLSPLCIRVQREQVRNAAGEPIRTQIKVIGFANALGSSYLLFFATVFVLLFLVS
PPPAQLILTLHLVILLCLLEIFDSERDVHHLTTALTSAASLEAFLNSDEGGLPPPPPHTG
PTFVQISMLALLAHLSFFSTGHQAVISSIQWSTAFIGFPSLTYPFSPILVTLNTLAGFVL
TAAALPLFVFWNLSPTLKDQGAPMVVGRNLLRAGASYMAYFAALALASATCSAWLRRHLM
VWKIFAPRFMLAGVALLATDFVVVVLAMAWGARGVLGKVRGSLGTRFAE