Protein Info for mRNA_4082 in Rhodosporidium toruloides IFO0880

Name: 12450
Annotation: KOG2194 Aminopeptidases of the M20 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 940 transmembrane" amino acids 36 to 58 (23 residues), see Phobius details amino acids 398 to 421 (24 residues), see Phobius details amino acids 433 to 459 (27 residues), see Phobius details amino acids 475 to 496 (22 residues), see Phobius details amino acids 516 to 539 (24 residues), see Phobius details amino acids 545 to 565 (21 residues), see Phobius details amino acids 576 to 600 (25 residues), see Phobius details amino acids 614 to 634 (21 residues), see Phobius details amino acids 642 to 662 (21 residues), see Phobius details PF04389: Peptidase_M28" amino acids 166 to 358 (193 residues), 123.6 bits, see alignment E=4.5e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (940 amino acids)

>mRNA_4082 KOG2194 Aminopeptidases of the M20 family (Rhodosporidium toruloides IFO0880)
MAKDDIDADGTGVVAVQSVKTAPSTPPRASPSKQWSLLPSLAVIVPLLALFTYVSAHLHY
ALPEPQHALFSPDGTPVFSESKAMRYIHDLAAYGDGTPRYRIVGTKEMVETDNYLLDKIA
EIRAEVVQRHPNGGMQVEVWHQIGDGTHLFDFMDKKVWKKYFGISNVIVRLSDGTPASKA
NAVLVNAHSDSTLPSPGAADDLVGVAVMLEALRVMALGDRKLTNAAIFLFNGAEESLQDA
SHLFITQHPLRTSVRAVINLEACGTDGKEIVFQATSPEMIQALARTPSPYATIIASEIFQ
TGLILSDTDFRQFVQYGNLTGLDMALVQNSYRYHTMLDTADAIEPGAVQHMGDNVLALLE
YLTSPETTMGNSAQPTPVLPRAPTSHTIFFSALGGKVFIVYSRATATVSYGILAALVAVV
VTDRVDWAKEKKVYILSVIGVLGGLISSIIGANLAAAALSLGMGKSMTWFRNENYPLLVF
GPPSLLAVVLYQYFFVSNRIRRPITTVAQDAADSALIEHASLVSQVVYNTAVTLIGHALG
VGSSYLIALGAASSLLALVINDYVLRRHSTGLHLATYVIGQSLPLLIGVEGIIGFLDLFV
PLTGRLGADAPVDFIIATLVGAVGYAAVPMFLPFCHRWGASFTARLAVFFTFATAFSLGW
FSRPSWSAYDAQHPKRLLILHMENTTTSPPEFHLHVASVDGNPFFNLVSKATEGLTAPNS
VPEATIADDLSVDWDIIYPVSQFLTTYKVPLPPVESTYTSPYLDTFKVSLTRNAINAIKQ
TRSVDIVLDHPGIIWPVLSFDGDVIAWDLPEPPQRGVIRHHVKSVASYGVNRFTLSLTLQ
LTTEQFAAAIREDQRAKGQRADVSAEDKSLASLRIDYSGLDIHGMYPASVQSDDVHEDAQ
RQVARQTRLGMRFFEQFSKRLEKEPVDAMLLSAIAGVAYV