Protein Info for mRNA_4094 in Rhodosporidium toruloides IFO0880

Name: 12462
Annotation: KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 72 to 96 (25 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 203 to 230 (28 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 286 to 306 (21 residues), see Phobius details amino acids 312 to 336 (25 residues), see Phobius details amino acids 349 to 367 (19 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details signal peptide" amino acids 36 to 36 (1 residues), see Phobius details PF07690: MFS_1" amino acids 5 to 336 (332 residues), 111.8 bits, see alignment E=3.6e-36 PF06609: TRI12" amino acids 18 to 155 (138 residues), 27.3 bits, see alignment E=1.3e-10

Best Hits

Swiss-Prot: 39% identical to ATB_ASPTN: Efflux pump atB (atB) from Aspergillus terreus (strain NIH 2624 / FGSC A1156)

KEGG orthology group: None (inferred from 45% identity to scm:SCHCODRAFT_54727)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (421 amino acids)

>mRNA_4094 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MGSASMMRDLNCSHEVATLGLSIFPLGFGLGPLFAAPLSEVYGRYPMYVVSSLVYLIFFI
PTAYGQNIQTVVVARFIGGLAASAGSTLVGGTVADLFETHERGLPMSVFSICAFAGTGLG
PAVSGYIELKKGWRWIEWVQMMCAGVLVVLIFLFTRETRGSVILSRRAHKLRKQTGDERY
QCRSDAERASLAVLMKVSMTRPLYLLGTEAIVFFFSLWVGFSWGCLYLLVEAVPLIFGNT
YGFNIGEVGLTFYSVVVASIIGFGTNFYQERLYRAHFARRGPEARLYASLIGGLVFPAGA
FILAFSQGRGHWMGPVVGLVLIFSGVYSIYLAVFSYLADCYTIYASSALSGQSLCRNLMA
FAMPLFTTQMYNGLGYQWASFLAGCIALVLAATPWILFKFGPTIRAKSKFAKELARMRGE
A