Protein Info for mRNA_4104 in Rhodosporidium toruloides IFO0880

Name: 12472
Annotation: K06664 PEX2, PXMP3 peroxin-2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 transmembrane" amino acids 212 to 233 (22 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 308 to 328 (21 residues), see Phobius details PF04757: Pex2_Pex12" amino acids 60 to 299 (240 residues), 125.8 bits, see alignment E=1.1e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (475 amino acids)

>mRNA_4104 K06664 PEX2, PXMP3 peroxin-2 (Rhodosporidium toruloides IFO0880)
MASQAGSGAAETGAADLERFWQPPPASLAKLPQLRASLARFPSPALRISRVSQLDASLLD
NELEGILHGPVKTALDGVRPAGGRTWEPEFMALLRLAVLKLSLWESGATYGSALQNLRYR
NEGRHAKGLQSTATDSNLTRLQKLAYTLLVVLPPYLHSRLQDRMLTSSWADEPLPRSWFS
LVDLRRLMTRGRRREEEMIQWKREWKRTGWELLNVGERLLAVLGLVNFLVFLYNGRYRTL
IDRVLKMRLVYAQRAFTPNVSFEFLNRQLVWEAFTEFLLFLLPLVNLQRLRLRLVKAISS
RATKSTTLRSLATALPAPLAGTLGLSSLRSSSASKANSKGSAKPAGPLAFLPPHTCPICY
SLSTAPPTHLPSASFADPTLPSASLLHTSGPADGGDTSVKIPYVANCEGRCRYCYYCVVG
ALAKAEEEADDSWACLRCGGDVTGAEREVPIEVAAGDEGTEGEAEKVEEKAGLAA