Protein Info for mRNA_4111 in Rhodosporidium toruloides IFO0880

Name: 12479
Annotation: K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 232 to 252 (21 residues), see Phobius details PF08700: Vps51" amino acids 76 to 157 (82 residues), 79.2 bits, see alignment E=1e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>mRNA_4111 K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51 (Rhodosporidium toruloides IFO0880)
MAYATPRRPSAIPELASPSPSFTRRVSTASSLGGGGQSGSPSLGSGSERKRRTRLRDYYG
LSTPRPGDGMDLDSPASFDANNYFQTLASTASLPELLKRETDLINEIRELDGERQSLVYN
HHGELISASDTIRKMKSRAEALDTSLDSLKTSFQSIAQLSASLAPTTASSTAVKPPASAP
QSPRSPTEAPHTPRSSRRLAALPESPDSPTTPTQSRARSASQPPPPEPIRPFSPLIHLPA
LLALPILLRSLLSTGEKAKADSLWGSWEPALRSWEDEGVEGAREVGMECREVLRMQRRAS
VSQMRE