Protein Info for mRNA_4112 in Rhodosporidium toruloides IFO0880

Name: 12480
Annotation: HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 31 to 48 (18 residues), see Phobius details PF11051: Mannosyl_trans3" amino acids 165 to 423 (259 residues), 134 bits, see alignment E=3.4e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>mRNA_4112 HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448 (Rhodosporidium toruloides IFO0880)
MMRREITSVASLREGLPSASRSSRRGLGRRIPLLLFAATICFALTVLLRRSNTKEAVAGA
ADLEAADQRLLKVLVKTKEAIQQETPLEDIAAFADRAKVLMELDEFGSKLNETYPRLNAS
TKALYSRSVYHHHQQLLQSLYPYINKNPQMPRTLSGLRARYTVPRGIIVPVGNDQFIYAV
HLLATIVHTHGVNFPIHVVYAGNDDLVPEKRAALRSISPNIDTVDILNYFDEELVGIHGG
GWAIKVFAILASPFQEVIIADADAVFVQNPEVMFDDPGYNATGTLFFRDREIFPGDGQVH
EWFHGVMKGREPSAQLASSRWWTDMASREEMESGVVVFDKRRTSVVYGLLYAGWLNTRVV
REEVTYKNTYGDKESFWMAFELCGLPYHLDREYAGIIGQLTHTDTKSHSIDTFIQSDHLF
HLDHKGRPLWWNGSLFQEKRVKDR