Protein Info for mRNA_4113 in Rhodosporidium toruloides IFO0880

Name: 12481
Annotation: K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 PF01251: Ribosomal_S7e" amino acids 12 to 191 (180 residues), 286.7 bits, see alignment E=3.8e-90

Best Hits

Swiss-Prot: 73% identical to RS7_SCHPO: 40S ribosomal protein S7 (rps7) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02993, small subunit ribosomal protein S7e (inferred from 83% identity to scm:SCHCODRAFT_83964)

Predicted SEED Role

"SSU ribosomal protein S7e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>mRNA_4113 K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e (Rhodosporidium toruloides IFO0880)
MSVAAKIFRTANAPRTAPDATETLVAQALLDLENNVPDLKAELRPLQISAAREVDVKGGK
KAIVVFVPVPQLKAFHKIQGRLTRELEKKFSDRHVVFIAQRRMMRKPTRGSRQKQQRPRS
RTLKAVHDAILEDLVFPTEITGKRTRQAVDGSKTIKVFLDQKDATNLEYKLDSFSSVYQK
LTGKNVHFQFSE