Protein Info for mRNA_4121 in Rhodosporidium toruloides IFO0880

Name: 12489
Annotation: KOG3195 Uncharacterized membrane protein NPD008/CGI-148

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 77 to 96 (20 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details PF05832: DUF846" amino acids 75 to 211 (137 residues), 167.1 bits, see alignment E=1.2e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>mRNA_4121 KOG3195 Uncharacterized membrane protein NPD008/CGI-148 (Rhodosporidium toruloides IFO0880)
MAYNPHSSSSNLLGTLDGQITADDESAAEEGRAGRPPASSSSSTHLQPPSSRGSVPVQGV
GSTDGEGNIFTQSAHPVALFFLFFFRCAAIATYLLCGFFSSSYVFSTVLVVVLLSLDFWT
VRNVSGRVLVGLRFWNQVDDDGTSFWVFESRSPSQPANAVDSKMFWIAMYAFPGAWILLL
FVGILKFNLSFLPIVMLALVFNVTNTVGYTYADRDAKRRWATGMAAQGMLGQMGGIGGSL
VSGIASSAFGRFFG