Protein Info for mRNA_4126 in Rhodosporidium toruloides IFO0880

Name: 12494
Annotation: K20408 WDR24 WD repeat-containing protein 24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1276 PF00400: WD40" amino acids 326 to 346 (21 residues), 14.1 bits, see alignment (E = 3.7e-06) amino acids 445 to 463 (19 residues), 16.6 bits, see alignment (E = 6.2e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1276 amino acids)

>mRNA_4126 K20408 WDR24 WD repeat-containing protein 24 (Rhodosporidium toruloides IFO0880)
MSLRNGSSYWGTENLPPNASLSAYSSFAGGSAMSGAGDSHFFPPGASGFSFEGPASSSIW
DASYRSSLAASPSLFDDSRPSPGLRQSTNESSPLNPQTYSSEGSGSRSRNASAVHLWDLP
NSASTSRSNGSSAFRTSSPVGGGRKAKEASRGLRYTVSGISRDKGLVGLAKPPKEAEQGR
VAVAGKTALKILKVPHGGSRHTSSAPVTAAPTPSSSYRSSSIAARRSRSRGSPAPGAIRD
DSVGREDDSADEKEEASEVLDVRHGSRLGPAYLFSDVRWGYGATANKLATAFGNGAVVLW
DLAKEGSRIDQLKYEHDRAVNRVVFGGQTGNWLLSGGQDGQMKLWDIRESRPAAMVLKAS
SPVRQLSFSPSPSQPFTLVAACASGTLIRYDVRFVARQNGGATDRVAGHIGSCLAMDWRD
GFSCERTPSSAGTPGVTSETAGGGREGGWVVTGGVDRTIKIWDFSLPTLSTKPVRTLYAS
QPVRSVAWHPTRATELASSPMPSLGLGATGEGSSSSLGEDAPMTPVTAQDPAITAAVKGD
SLRGKSALDGNAWKNEIEVWDVRRPYFPKVAIKTEEPTAALVYNDDETIWATSKATPTFL
QHDVGSDSYSILDGIDRTVTTWDAAGELAFVDDGRKLNDIPFERPSRFMPPVDAPKHRPD
TFVSTVADVDTDFSIESFVYLAENWRLSGKFSEVCEHNAQVSLYAGRPDAGHVWATLRTW
FDDEPFFPSEATSPTATPPPEPMPPPPVVELPATQWLTSPKSLSAPQKSSHSRRGSRSGR
PSFSSGRTSRRSSLEGGHGAHSESTNRPRLDAFSEESTASETDPAEGKKLYPDLSSMSSD
SEHEIIGRRRALQAVNPKRLAASLGALRSPSRDGRRSRSSTNGSQAIDDDEDDTRLSNLA
SRVISRRNSSSSSSSSDADLDDGDETGRTGRSRLSRSARLASMHASFIANRSRRPSATAG
GNSIERRGIRSRESTLPRKASGRQQSLEVASKGRRRSIDQSGTASRRGSADHGSATHDHS
RRGSKDAAAGPSGRELSRLAGLQHASDAHEVVRRQLVTTLHDYADRGDSQLCAVVCCVLQ
DKDIEFDRLWLARVTKTYLDHLRRLDLHIPAAALNKFCDVAALTALTQNTVVFHTACGAC
GKPVDQPPFDFCIRCRRRIATCCICHLAVDSLYTLCAGCGHGAHVDCLEAFASTIADTLT
ASLPQTPLDHSHPSTPGIATPLRAWLWGEDDDDPAWTTAAATEGGAYLAAKQLKNVLSGC
PAACGHSPCSLMPPAA