Protein Info for mRNA_4128 in Rhodosporidium toruloides IFO0880

Name: 12496
Annotation: K02926 RP-L4, MRPL4, rplD large subunit ribosomal protein L4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF00573: Ribosomal_L4" amino acids 95 to 288 (194 residues), 185.8 bits, see alignment E=3.5e-59 TIGR03953: 50S ribosomal protein uL4" amino acids 97 to 287 (191 residues), 174.4 bits, see alignment E=7.9e-56

Best Hits

Predicted SEED Role

"LSU ribosomal protein L4p (L1e)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>mRNA_4128 K02926 RP-L4, MRPL4, rplD large subunit ribosomal protein L4 (Rhodosporidium toruloides IFO0880)
MSLLAATRRVLRPSAFASSSRAFATSVESTAPPAAAPVRRAVAKTSTPTPKPLTLPPAPT
KTPKPSVFDEFVHVPLQTFYPQGASVQVGNEPLLVPLPATVFNIASRPTLLHKIIVAHRA
SLRQGTASTKNRSEVNYSGKKIRPQKGTGRARLGSRGSPMLVGGGRAFGPRPKGPNGWKL
KINHKERQLGTRVALSEKWRAGKLAVIDKAGLEVPKTRLLHEQIVKREWEEALFIATAGQ
SDEARQAFVLAAQNIPGVKVVTDINKLSVYDIVKGKRVIMELDSVDDVIARADPLNPLLE
LDEYEDGEYEEISQEELEAFLAENGDILEQLQRGAVPGQLSA