Protein Info for mRNA_4142 in Rhodosporidium toruloides IFO0880

Name: 12510
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (507 amino acids)

>mRNA_4142 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MLSPPQPAQGKRPSLRRLHVLLIAFATLAFHLWLAAKLASFQDSLGTTLGDSGGGARGGD
DARDLEGAEWRRLDGVRTLLGIGRLWAWCSVGIACIGVWGLAQVRSNRSQAMDAPLILVE
SQQDHLPFVRLFMLNSFLSLALDTFLVILVILLLTLSSPTSASLATTLCQALSSAPSASS
SFSLSFGLPDLLGLSLEACEERFEGVVVSALATLAVVEGLRGWGAVKVLQFYAALVQRKN
SGRHARQGSEEGRRRGRGEGDDGQYYDSPVELESGPALHRSPSGRKRRTESDAAERRRRE
RSSSGASLSGGGNGQKRHEKETRIFLLPRPEERSGGRAARQEGAAEGVPLLSLTASSPVR
SSFPPPPKQGHGSSHLASSGRRVLVYAPVMVSPEEARSLGATELVLQGGRPPIPRSHSHH
AQPSASSSASSSGRSARSRSSTITPSSATLTAAPSSSHLSIDTTRGSPPSRQDSDGLRTP
IALHSPAFAAALREDWEGEPVKGSKAA