Protein Info for mRNA_4144 in Rhodosporidium toruloides IFO0880

Name: 12512
Annotation: K01669 phrB deoxyribodipyrimidine photo-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 640 TIGR02765: cryptochrome, DASH family" amino acids 4 to 509 (506 residues), 477.8 bits, see alignment E=1.6e-147 PF00875: DNA_photolyase" amino acids 6 to 189 (184 residues), 100.5 bits, see alignment E=1e-32 PF03441: FAD_binding_7" amino acids 340 to 543 (204 residues), 177.2 bits, see alignment E=3e-56

Best Hits

Predicted SEED Role

"Cryptochrome"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (640 amino acids)

>mRNA_4144 K01669 phrB deoxyribodipyrimidine photo-lyase (Rhodosporidium toruloides IFO0880)
MGRKVVLTLHRNDLRMHDNELLHAAHDSSHSDVTHVLPLYVFDERFVELSGFPGYEREGP
EARTRLCGFWRTGAFRARFLVEGVYDMRTSLRQRGSDLLLRFGKMEKVTTDVVKALIANG
DEVREVILQKEFYTEELAIERKLRKALREVGVELRTFDQVPLIHVNDLPFAPEAMPDVFT
PFRKRIENLPRLGRPPFPIPSPFKPYPRPPSDSQPWPGYGAHIELEHRGLEYVLHCLLRP
LQDTFQLRAGSEGKNQKSAFPYAGGETPALERLEWYFKEGNPPPVARYKETRNGLLGHSY
STKLSPFLAFGFISPRLIVKALDEYDEKFRSTQNTYWIRFELLWRDYFLYAARKFGSKLF
TLGGFEERTDPKQAAIKTQPGWWKQWDQDQPLVGQTDKEQPAVRWMQGKTGVPFVDANMA
ELRESGFMSNRGRQNVASFLTKDLQIDWRLGAEFFESHLIDYEPSNNWGNWAYIAGVGND
PRASRQFNPVKQGNDYDPYGDYVRTWLPQLSAVPTNRIQCPWILSDADFNKYIPKGSYPR
KPVIEQPGWKAHYTRRGPSKQGVPNRNERAKNLGPVILGAAAAREQGKKPNGVSTATQTA
GGETDGSSRRRETKLNGIVRAEAKQNGSGGGGATKARYLE