Protein Info for mRNA_4170 in Rhodosporidium toruloides IFO0880

Name: 12538
Annotation: KOG1256 Long-chain acyl-CoA synthetases (AMP-forming)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 584 PF00501: AMP-binding" amino acids 45 to 206 (162 residues), 134.4 bits, see alignment E=2.3e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (584 amino acids)

>mRNA_4170 KOG1256 Long-chain acyl-CoA synthetases (AMP-forming) (Rhodosporidium toruloides IFO0880)
MGGEGLKRRRHTCIKTQTINAPGLKGVLACKAFADKLHNLRTTGLVTHAIWDRILFNKVK
QLMGGRVKNLSTGSAPINPDVLDFLRFLFCCEVTEGYGQTETSGCTNRCYNSDIWSAGAV
GPPLAGVQMKLVDVPKMGYLSTDQPYPRGKICMKGANIIPGYYKDPEWTRELIDEDGWLH
SGDVGSIDQLGRLRIIDRVKNLVKLSQGEYVAVEKIENVYLLCPLVAQMYIHGDGLRDHL
VAIVNVDLIQFAHAFWLLTFHDNLAGLAEVAKDDKVVLAVAQMLAKYARDARLLGFERIK
DSLHLRVKPFPTDCLTPTFKSKHNVIAKTHATELAELNTKAEGNPTSVRGTRTHPFGHCV
ADIEAKEAVQEEEESAKVRDERRELKTHLKGRLAFVPAMASLSSGSEDEESDWEDQLAPS
GSRKDGDNAGFPATTSALWTVHKRAVIERWNAEWASSSLPRPLASVVKVASSAHKYYYGL
SRRQATLLCRLCTDASALNKHRARFDPSRSDLCLCGEVESREHFLILCPLYEEARHSFYK
HIRLRQAPTVALLLSNVDYRFPLLDFITATRRFASLTDVAKGEQ