Protein Info for mRNA_4173 in Rhodosporidium toruloides IFO0880

Name: 12541
Annotation: KOG2348 Urea transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 65 to 88 (24 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details PF00474: SSF" amino acids 44 to 144 (101 residues), 25.3 bits, see alignment E=3.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (292 amino acids)

>mRNA_4173 KOG2348 Urea transporter (Rhodosporidium toruloides IFO0880)
MDVVGHPTSVVGGNILERLEQCMVVRSRRNHPTLLLHNVTAKIKQNADGAVTFPKIACAR
YGWPCHLLFTSFFLICAHIVTGSLVLSASSTINTLTGANIIATNFLLPLVIAIYVVARGL
PATFIVNFLHTAIIFVVLYIFLFSIYGTSDVVGSPGAMYDLLKKAADLAPVAGNAAGSYM
TTKHDDEIEQRHTFRRLHDCFRICWCCTRSGILATSYSSRSQSTPRAYILGSFTWFSIPW
AFGTPTLPRRCVADRLPLLADGPLSLVFPVSCSDCPAGYYACSPGQHSQSAL