Protein Info for mRNA_4180 in Rhodosporidium toruloides IFO0880

Name: 12548
Annotation: K03260 EIF4G translation initiation factor 4G

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 PF02854: MIF4G" amino acids 192 to 456 (265 residues), 199.2 bits, see alignment E=6.7e-63

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 4G"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (791 amino acids)

>mRNA_4180 K03260 EIF4G translation initiation factor 4G (Rhodosporidium toruloides IFO0880)
MQVCTARPDDLPNLAEIGMVDDGVAPRGGAFGGSRRGAMGPPGVPSRSNSAVGSFGRSAS
VGGVGGGFGGMGNFGQGGMGGGSTSEQRFAASLARSTSGAFGGARGSMSRTTSQTGIGGA
FNTGGRIRSEGGRKRKEKGPPGERDESRKPGQHVAGEGFEGATLGPRSETGWVPSVIGGG
VQADANSPEMVQRKVKALLNKLTLERFDSISNQILEWANKSVDETDGRILRQVIALIFEK
ATDEATWSEMYARLCRKLMEQVSNEIRDETVKTADGTPVAGGALFRKYLLNRCQEDYEQG
WKNKEAAAAAAKSKEADDKAKQEANDAAKKEAEASGKEPAKEAELLSDEYYAAQKAKRRG
LGLVRFIGELYRLQMLTERIMHECIKKLLANTENPEEEDIESLCRLLTTVGKGLDNPKAK
QHMDVYFSRMNTIANNPKVSSRMRFMILDVVDLRSAKWASKQAAQGPKTISEIHADAQKA
AEESARRVASSGGKLPRLGDQLSRPNSRRGQARDFGVAQPGADGWTTQPQRPAKAGDLSA
FGRIRETGPASVGFGPTGAFANKGKKKQEESRPSTPSNPFALLSGGGDMAEEPAPASQRP
KLNLQPRTKPLEGDGEGEGEDEKKEDEEEDDGAIDPNASSMSRAEAERRAKNSVEEFFAV
KNVSEGVASVEALPKEYRSLVITAISEAALTKKADAVNLTKDLLTQVASKDILSHDALIG
AFESVFKTLADVAIDAPGAWGFAATLLLGLEATEEDLERLKGKMESEEGEEEVEFAKESF
DRAWQKATTAA