Protein Info for mRNA_4182 in Rhodosporidium toruloides IFO0880

Name: 12550
Annotation: K13288 orn, REX2, REXO2 oligoribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF00929: RNase_T" amino acids 40 to 216 (177 residues), 95.3 bits, see alignment E=3.1e-31

Best Hits

KEGG orthology group: None (inferred from 41% identity to mph:MLP_37220)

Predicted SEED Role

"3'-to-5' oligoribonuclease (orn)" in subsystem RNA processing and degradation, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>mRNA_4182 K13288 orn, REX2, REXO2 oligoribonuclease (Rhodosporidium toruloides IFO0880)
MLLPRVVRPVARTFSASRPSTRRYAVPPVTMPRPSAENLLWIDCEMTGLNPYLPREGIKE
GEEFFPDRILEIACIATDKHLNQLDEGVEYIVKTDKEVLDRMNEWCINQHGKTGLTQACL
DSKYTMQEVDKHVSDYVAKHFPPDAPALLAGNSVHADKAFINKDLPLLASKLHYRILDVS
SLKEIGRRWYPSLDWTSKKDEAEHRALSDIKASIAELKRYRENLFKPVEEEDAAEKTAAR
LGSPVRHPTI