Protein Info for mRNA_4184 in Rhodosporidium toruloides IFO0880

Name: 12552
Annotation: K20989 DUR3 urea-proton symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 262 to 279 (18 residues), see Phobius details amino acids 300 to 324 (25 residues), see Phobius details amino acids 346 to 372 (27 residues), see Phobius details amino acids 380 to 406 (27 residues), see Phobius details amino acids 418 to 439 (22 residues), see Phobius details amino acids 447 to 465 (19 residues), see Phobius details amino acids 482 to 505 (24 residues), see Phobius details amino acids 592 to 613 (22 residues), see Phobius details amino acids 625 to 647 (23 residues), see Phobius details PF00474: SSF" amino acids 60 to 388 (329 residues), 42.1 bits, see alignment E=2.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>mRNA_4184 K20989 DUR3 urea-proton symporter (Rhodosporidium toruloides IFO0880)
MSGYPEGSREFTRLLPPGSGYGVVVGVGAFFALAMIFLTRLQGRFTRLDPNSATEFATAS
RAVKPGLICCGIVSAWTWSATLLQSSAATYSSGLSSAWWYGVGGTIQICFFAACAAKIKQ
NANGAVTFPEIARARYGWPCHLLFTSFFLICAHIVTGSLVLGASATINALTGANIIATNF
LLPLGIAIYVVAGGLRATFIVDFLHTVILFVILYIFLFSIYGTSDVVGSPGAMYDLLKKA
ADLAPVAGNAAGSYMTMKSNGGILFGGCTIASGFAGVALDQGYWQRAIASRPESTTRAYM
LGGFSWFSIPWAFGTVMGLGARAMITNPAFPTYPYALSAQQVSAGLVAPAAAATIMGKGG
AIAILLIVFMAATSACSAELIAVSSLMVLYSHVVIVLYSIWAGAWSTILHYASIDLGWLF
YVQGVLLTPAVIPVALTVMSKRQSKHAAFFGTLFGTACGLIGWMLGCKKVYGEINITNLA
LPYAAISGAAPGLVMSGLASLIITAIKPDNYDWNSTRAISLSDSDVPSEGKIERSSASTP
ELDDEKKDEPTATVATAVLDAQDPGVVAPALEEAATDPALDRAVLQKVFVRSLWISGIFA
LVIAIIIPIPMFASHYVFSRRFFEVWVAFSIVWVLLAGGFCIILPILESRKEIFILAKSA
LRVMTGRTVKEDVVA