Protein Info for mRNA_4216 in Rhodosporidium toruloides IFO0880

Name: 12584
Annotation: K13123 GPATCH1 G patch domain-containing protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 981 PF07713: DUF1604" amino acids 46 to 132 (87 residues), 128.5 bits, see alignment E=7.1e-42 PF01585: G-patch" amino acids 179 to 221 (43 residues), 31.9 bits, see alignment (E = 9.8e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (981 amino acids)

>mRNA_4216 K13123 GPATCH1 G patch domain-containing protein 1 (Rhodosporidium toruloides IFO0880)
MASSRLKRKIETADEGQYGNLNESFVSVGTALPALTENKKDKNEFKPVWQQEVYDDQGRR
RFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRASQNQRSVLDAAKEFMDDEDLAEL
ASSRTLETSSTYASSSRATAPPPPAHDPLLGNFAGLEGAAAPAPNFDETLASLIQPSSSR
IGLKLMRKMGWRDGQGVGPRVTYQQRKRQAADIGVKLDEEDETGGEAEKHLYAPLDRPLT
LIKGTSASMDKGWGLGYQPGMNLQQQLRSEGGYAGQASARQTVYELDDDDVYGGSGAGMD
ALGERQKRALGAYDGEDDDDFGTIRPSRGVGGREMPKKRGGPLQEFHDGTKVLPGFVLQS
EPLVGPSLSQLPPQPPPGWQPNPSRLWKENQPPATDAKGKGNQLDADERGSLLGEKLPPP
VPKSVFDYLSAKSRERLAAATGAPPSTSASATHDAPPPPPEPDAQLFVPPIDRPTASAAL
RGFQPYSAASTSPDPIKQARYTLYLQYQSSGEASTTSSPFGPRQLPNGKMQTVTELNREL
SEYAQAATVFKPVSGMLGNRFQSSKTASLDVPKIEPGLYQPPPKSAAAPSTSTDLAATYG
DASASPPKPPEPALTPAQQAARAGNFGPLTRTTTPFRPARLLCKRFGVRDPYENAEVAEN
GVGGKWGEATSSGWGTGNVQTSQPIGQSALDEMMQSAGFKRFQEASKEVEADAPEVAKGV
FETPAEGSTGSAPKSKPKVRPTLETVGYGDDESQGQEIVDEQKAPPDIFAAIFADSDDED
ESEDGLEPAVVAATAPAPATTVVSIDKVEPPAAAPTSAISPAPPAEEHPTPLSLDTIASY
KPTFAPSTSRTTSSAKPEKKKKAKRKSGALSFAMDEEGEEDDTAATSFSKKLKRDKDERD
RKRRRDEGEREESRRSSDKRRKDEQGSKVAAEEEDEWAEAPSQVHPDVLAAMQKSSQAAV
SRPLAEESKVPKARPRAADLY