Protein Info for mRNA_4222 in Rhodosporidium toruloides IFO0880

Name: 12590
Annotation: K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 156 to 177 (22 residues), see Phobius details PF14852: Fis1_TPR_N" amino acids 67 to 99 (33 residues), 54.6 bits, see alignment 6.9e-19 PF14853: Fis1_TPR_C" amino acids 104 to 156 (53 residues), 87.3 bits, see alignment E=5.7e-29

Best Hits

Swiss-Prot: 63% identical to FIS1_USTMA: Mitochondrial fission 1 protein (FIS1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: None (inferred from 63% identity to uma:UM03919.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>mRNA_4222 K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein (Rhodosporidium toruloides IFO0880)
MSTRLAVLHLEGSTASLALSVHSRLANMPSDVLPAAVDAQSPLSASELNVLRQQYLDEQA
KGWVSVQTKFNYAWGSVKSDNRVENGEGVALLMDIYRTEPSRRRECLYFLAVGHYKLGNY
PEAKRYNSLLLEKEPNNIQAQSLQQLIEQAVAKEGYVGMAIAGGAAAAVGIVFAALMSRS
RR