Protein Info for mRNA_4229 in Rhodosporidium toruloides IFO0880

Name: 12597
Annotation: K03145 TFIIS transcription elongation factor S-II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 TIGR01385: transcription elongation factor S-II" amino acids 61 to 323 (263 residues), 251.5 bits, see alignment E=7.2e-79 PF08711: Med26" amino acids 64 to 114 (51 residues), 51.6 bits, see alignment 1.2e-17 PF07500: TFIIS_M" amino acids 160 to 269 (110 residues), 95.8 bits, see alignment E=3.6e-31 PF01096: TFIIS_C" amino acids 283 to 321 (39 residues), 67.2 bits, see alignment 1.4e-22

Best Hits

KEGG orthology group: K03145, transcription elongation factor S-II (inferred from 51% identity to cci:CC1G_02665)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>mRNA_4229 K03145 TFIIS transcription elongation factor S-II (Rhodosporidium toruloides IFO0880)
MEGRQHGQDSVWKARAGRGDLTGRLLVRAGWAAKDTALKVSNLVNQDLSLNFALSALSQD
AVIILKRLKEEVVATDELLRETKIGVTVNKLRNNTAKEVADLAKELVRKWKADVGKTGTK
KTASPSPGPSPIPAANSGGPPRTHKTDGIEFGKGKDATGDKTREKCCELIYDALAQDSGA
PSDLILSRARALENHVWEENPPPAGSATYRNKMRSFYLNLKAANNPGLREGIVSGEISIV
QLYNMDPKDMASEERKAENRKLVAENLFKAQAAAPQQAETDAFQCGKCKQRRCMYYQMQT
RSADEPMTTFVTCLSCNNRWKFS