Protein Info for mRNA_4231 in Rhodosporidium toruloides IFO0880

Name: 12599
Annotation: KOG4476 Gluconate transport-inducing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 826 PF09729: Gti1_Pac2" amino acids 10 to 170 (161 residues), 124.4 bits, see alignment E=2.9e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (826 amino acids)

>mRNA_4231 KOG4476 Gluconate transport-inducing protein (Rhodosporidium toruloides IFO0880)
MADPAFRGFDFEKRELVVSGAVFVFDEEETGIKRWTDGLTWSPSRTLGNFLVYRELDKKA
ALQKIPVTTGGDAANGEDDDEGGSSGKSRLLGGLTSKADPVDDSSDPSRPGSSSAARRSL
GDSGGGSQQLDRARERALVGSLTSSYRFRSDGLVKKTISLNGLHLIGYYRIEDVTSGRLR
TPSSHPELVSIEVSSAFLAPALFRIPPIVEIGPDGSLRYKGEADAPLSPLTRSGSSQGFP
TPGLSQSGPASSDSSFLPGMLPTPGGGWDYTPTVPAPGSPRRGAMSSFRASNRFDPYSSS
RFSPTTANFPANAAYPFPAVPLNTPPPPRNAFSPVGESSLASTNDGYFQSRTPPVDGGAG
MSVSAPMTEGWQGPQGAVYQPLPPPPSRGGVDAMPNSPSFYQPRRSIPYAPTTDAQSANT
IFAYNPPPPPPASNAPLTASQYAHYRAPSTATGSTTPQFSAYQPMQPYNQHQQAPLPQAH
GQQRQYASPLPHPPSTSGEASQSPFATPPATSHAARSVYPHPSQQPTHSQTTSSHNSPAT
HWAPPPPRSGGPIQEPTSSLAHQATSLMSEVSPHSPADAGPDSRMQRQQQAAMQAAYASA
ASYGRAQHAQQQQQGGWQAAPQPQPQGEQAYPYIQRQHTPSGLVAAIANEEVVPASGHGL
GVSAYGEIVPASTLPPQQRSSTAAYQHTSFRQSMPGQPSVSLSSQHAYAAPPPNHLQQQR
YDGGVSPLNQHLSGMLERDGERGGVNGGNAGWTSIKRETPGPVSPPIQHQEPPPLPPHSM
PYAPPQYQHYPRPEQLPPPSNQPQNPQQQWWPNNESWQHSLRPDGQ