Protein Info for mRNA_4233 in Rhodosporidium toruloides IFO0880

Name: 12601
Annotation: K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 PF01423: LSM" amino acids 42 to 109 (68 residues), 67.7 bits, see alignment E=2.9e-23

Best Hits

Swiss-Prot: 66% identical to SMD2_HUMAN: Small nuclear ribonucleoprotein Sm D2 (SNRPD2) from Homo sapiens

KEGG orthology group: K11096, small nuclear ribonucleoprotein D2 (inferred from 83% identity to ppl:POSPLDRAFT_87459)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (113 amino acids)

>mRNA_4233 K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2 (Rhodosporidium toruloides IFO0880)
MSNVANLANQNKSEMDEAQIRALEEHEISQGPLSVLQTAVRSGSQVLVALRNNRKLLGKV
KAFDRHSNMVLENVKEMWTEAPKSKNRKPVNKDRFISKMFLRGDSVVLVLRNT