Protein Info for mRNA_4250 in Rhodosporidium toruloides IFO0880

Name: 12618
Annotation: K08956 AFG3 AFG3 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 955 transmembrane" amino acids 271 to 288 (18 residues), see Phobius details PF06480: FtsH_ext" amino acids 152 to 254 (103 residues), 44.8 bits, see alignment E=2.9e-15 PF00004: AAA" amino acids 374 to 506 (133 residues), 141.9 bits, see alignment E=3.5e-45 PF17862: AAA_lid_3" amino acids 658 to 697 (40 residues), 45.5 bits, see alignment (E = 1.1e-15) PF01434: Peptidase_M41" amino acids 712 to 893 (182 residues), 221.7 bits, see alignment E=1.5e-69

Best Hits

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (955 amino acids)

>mRNA_4250 K08956 AFG3 AFG3 family protein (Rhodosporidium toruloides IFO0880)
MLPRSTTTRLSHSLRARPLISHSSSVHRRAFSLRPWLPAVLRAQPKDSKDAPKDGERPPG
LDDFFGGFLGRRPKDNAVPGASPAPGAAELAPKDPLKGLFGGEVGDTTGGPGPDKNKRDG
KDGKRDKGNQGGSGKKPDPSEQPSPPNPSPVSLLATTIAMYALYRLSSQYDPSSREITWT
EFYSAFLSKGLVDKLTVINKSRVRVGLHSNATGTMGTGSSPAGSTGSYYFSIGSVEAFEK
KLDDAQNELGIPLGERIPVAYHDEIPLGQTLLNLLPTLILIGSTVWIYRRMTGGGGGLLG
GGGGGPGGGGGPGGIFGVGKSRAKMFNHETDIKVGFRDVAGMDEAKEEIMEFVKFLKNPE
HYERLGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRD
LFTQAKKNAPCIIFIDEIDAIGKARGKGGQFGGNDERESTLNQLLVEMDGFGTGEHVVLL
AGTNRSDVLDPALMRPGRFDRHIAVSNPDVSGRRQIFNVHLRKLVLDVPRPENAKEGEKE
GAAAEEDGEAQRESHADGDKQQPAVAHFQAAPTASASSAAIDVSASPVLSALLNATPTSD
KPSSRRNKNKNDAAAKSNAPAAEPAPSGDKAASNFESMYTLKPTDEPDPNSPLGKLIRKL
AAHTPGFSGADIANVCNEAALIAARLGADVVKEKHFEMAIERVIAGMERKSRVLDKEEKR
TVAYHEAGHAVAGWFLEWADPLLKVSIVPRGVGALGYAQYLPKERYLYSTEQLIDRMCMT
LGGRVAEEIFFKRITTGAQDDLQKVTNMAMQTIANYGMNASVGPLSYRQEQESFQKPFSE
KTAQLIDDEVRKMVRDAHARCTQLLTEKRQQVEAVAKVLLEKEVLSRHDMIEILGPRPYG
DAYDEAVSFGSSAPEPTDGKDAPFGKGVEGGLGGGIGNNVPQPKGIEEGARAQKA