Protein Info for mRNA_4252 in Rhodosporidium toruloides IFO0880

Name: 12620
Annotation: HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF02627: CMD" amino acids 40 to 106 (67 residues), 29.8 bits, see alignment E=1e-10 PF00561: Abhydrolase_1" amino acids 217 to 338 (122 residues), 62.3 bits, see alignment E=1.2e-20 PF12697: Abhydrolase_6" amino acids 219 to 454 (236 residues), 46.8 bits, see alignment E=1.2e-15 PF12146: Hydrolase_4" amino acids 242 to 323 (82 residues), 29.3 bits, see alignment E=1.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>mRNA_4252 HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118 (Rhodosporidium toruloides IFO0880)
MPRIPYKNPAKGTSAIGDAIRERRGARGLTPLDQSLLNAPEIAAGWNNLLGAVRNRNSLP
DDIRELMILRVAARNSATFEWIHHAHVGTDAGLTAQQLTIIRDVSTPLPTPASPSPLSAY
QAAALRFADASTYNVTVPQSYLDELKQHLKDDQQLLEATAVVATYNMVSRLLVTLDVGDM
GEQSVPLPETEQSEHDIEVEEGVKLHVRVAKRGDDAPWLVFVNSLMTNQKMWDGVLPRLS
KKYNLITFDQRGHGKSSVPPNPCTLEVLANDIAAILSKLSIPTPIHAVIGVSQGGATTLA
FAQHHSSLFSRLVACDTQATSPAANAKAWDERIALARQHNSMAPLADVTVPRWFPSGSTS
EFNVGGRRQFFIDDMITSTPIEGFAKGAAALQGYDVLPGLADKLKGKKVLLVAGERDGAL
PGVLKGLKEKLEQDGVDASFEQITGAGHLPMVDAAGPWLDVVEKFLA