Protein Info for mRNA_4260 in Rhodosporidium toruloides IFO0880

Name: 12628
Annotation: K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1392 PF13446: RPT" amino acids 543 to 592 (50 residues), 16.3 bits, see alignment (E = 1.1e-06) amino acids 609 to 671 (63 residues), 14.6 bits, see alignment 3.9e-06 amino acids 690 to 746 (57 residues), 41.3 bits, see alignment (E = 1.7e-14) PF00443: UCH" amino acids 771 to 1375 (605 residues), 132.4 bits, see alignment E=3.3e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1392 amino acids)

>mRNA_4260 K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28 (Rhodosporidium toruloides IFO0880)
MQTGRPKKISRMYGSSSKPSGSAARLATGSSTGWADDEWAETPAQPATSMHATSSARSTA
GYGGGAEPSWQEGARFEDVVNAKHDAQHFEHAPGPSTPTAPIKAITWRESAPPPPASGAA
NPLDGWWTTPRVLAKPGEKGGKEGIWSQTVWDFTIDDTPTASGDYKPMGEWVDLPGSTGK
SEADSQEMEVEQTEQQKPLPPVEAKDSSAAASTSSPQPIPPKPRRGFRTITREELDAARP
HPSLFFCRSTFSWALLAQVQPAQKPSDAPELWQQSARTIDSQEALTTRLSPPLEPPIPLA
DAASIVSSADDVQREPRTLSNLSSPIFELTSSQQRVCLHSASTDFFAGAVRPELWQRLFE
AREANPAAGDTALQSKFKTVETLWRIVDGCLFKGETRGLPVTGKTIGKHLPIGDEIIHDI
MIATLGCKVYTAKVQEKDKLVEKTFIQLPSIDESTDEGRQHRKRLLRLWLETGIWLEDHY
KRYPDHLERRPTRIRLKENTKEVLTGILGGDKLPRIPSQESWLTAGSSSRLDSSGLDPLA
NDYSLLGLVPDLADSVVERVYDMQCEFNSFYVPFYLNALSRIAQGRGSEALNMKVALERS
QDKLTSDEINAAYQELRLSSPFDMYSTITDDDLVSAFQTRLTQVTHPGRRKALLEAARIV
AAYTQSELFKTILATTDLGDVDGAAKPKMDIDAAYRTLGVDADTDDGLISMTYDIRLNDA
ASDTEKKKMAEALQVIATTRNRPSLLALANGQKDEGAGWQAAPAIDPDRPVGLTNIANTC
YLNSLLQYFFTVRELRETILAFDDSRTPVDGRQIRVGGRLVTPAEVKRSKRFVKLLQNLY
QQLIHAPVSAVTPETELAYLALVPSKEEADATTATTDAPIADKADLTDEPVAMATEDEAK
IATDENSGRSPSSVLGKRKNGDDLMAEDTQMHPLSPTLATTSRRTSILTISDEAGDAQMA
ESSQQQTPTPTGGDEDGHRIKRGKSVDRTVASDVEPMKVDAPPPLPPRPALPAPPTEAKT
GKEKEKELERQFSTYMAFGRQNDVTECMDNVMFQVEAALLANAANGQAQDAANLLRRTFY
GTMRQQLVFDDPSSVSDPVRTQDQPFSCLLLDVPPTSSSSAALTRDIYDGLDAVFAPSPI
ELESHPAQRRVALVSPPPPVLQIQLQRVQYDRVKQTAFKSNAHLRFFEEIEVGRYCEVEE
GDGEGEERRRRTEEMRKELESVRERLGELTADKGANTPSILRSTLSHAQHLSTLPSLTLP
TSLTSLLTPSLTSDLTSEASDLESEISALEKRVEELRREIEGVWREGEREETRYQLTAVF
IHRGTATSGHYFIYQRDHRNPQRWLKYNDAVVSEVDKEEVFRETTGDTNPYFFSYVRKDR
LDAIESIMRLPA