Protein Info for mRNA_4263 in Rhodosporidium toruloides IFO0880

Name: 12631
Annotation: K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF05783: DLIC" amino acids 38 to 316 (279 residues), 137.3 bits, see alignment E=3.8e-44 amino acids 350 to 442 (93 residues), 27.6 bits, see alignment E=7.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (652 amino acids)

>mRNA_4263 K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic (Rhodosporidium toruloides IFO0880)
MPSLAPLSASAGPSSASPLPPPPGATSSNGVVLPGNGDLWSSILDSVKGTKNVQTKQCFI
LGSHNSGKSTLVSRLRTTTGEAPLSSSTAAGKGRDDGETPLDLGMSYEVLDVREEGDEGD
TVARLGFFQVPAPSPPYPALLSLALSRSNLLDSLIILVLDWEKPWNFVKELEAWLALLED
QLKRARRGEKEKEAYEEVEARERLEAYLRSYQEPTASGAAPSISAAAHLDDSPLPPGILL
DNLGIGLVIVCTKADQMNMLERDREFTEEQFDYIQQLLRTVALRYGAAVFYTSQTLPSSY
VKLRQYILHRLFAAPASAALAINASANPTTPTSSSRPAAPAPIATSARASFPFPHRANVV
DRDQLLVPAGWDSWGKIKIMRERFDCEQAGEGWEADLERLRAGVSGAETDAAGEDTKRGL
RREYEMVVVDFEAEDRPTNASTTIAPADEQSFLRQHYEVLQAEAAKDPRLAFRQPASTGS
VSSTLGPSVVGPMAGASLDLPTVASTLERARDRGDAAAAAGRDGARPDERYRTSMSRQNS
GMSTSARSPPLSSSATFGSSIGSSNASSTSALLGRSLSKEAAAGSPSAAAGGASSTASAA
AGGNQVLADFFQSLLTARTAGAGGATGAAGSAGGLRASTRGASPGGSAEEAK