Protein Info for mRNA_4267 in Rhodosporidium toruloides IFO0880

Name: 12635
Annotation: K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF02784: Orn_Arg_deC_N
  • amino acids 127 to 363 (237 residues), 250 bits, E=2.3e-78
• PF00278: Orn_DAP_Arg_deC
  • amino acids 305 to 488 (184 residues), 50.9 bits, E=1.6e-17

Predicted SEED Role

"Ornithine decarboxylase (EC 4.1.1.17)" in subsystem Arginine and Ornithine Degradation or Polyamine Metabolism (EC 4.1.1.17)

MetaCyc Pathways

• superpathway of arginine and polyamine biosynthesis (13/17 steps found)
• putrescine biosynthesis III (2/2 steps found)
• superpathway of putrescine biosynthesis (3/4 steps found)
• superpathway of polyamine biosynthesis I (5/8 steps found)
• superpathway of ornithine degradation (4/8 steps found)
• superpathway of polyamine biosynthesis II (4/8 steps found)
• superpathway of L-arginine and L-ornithine degradation (7/13 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
• Glutathione metabolism
• Urea cycle and metabolism of amino groups

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.1.17

Protein Sequence (528 amino acids)

>mRNA_4267 K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase (Rhodosporidium toruloides IFO0880)
MAAIAIPAAAAQAFAQDESTSSFYPLSCSPLSRSPFLAQLSLSPNSAPKYSSVVPSANQF
AQVRRKSSVSAHARPVIRPPTQAVPREAPLPAIHSGAIIDNFRAALDTIDMDDCEAHGEN
AFFVADLAEVYRQHVRWMRELGHRVQPFFAVKSNPDPYVLRLMAALGMGFDCASQPEISA
VLGLPGPVSPSRIIYANPCKAASFIRNAAKCGVDTMTFDNADELAKIKKYHPNARMVLRI
LTDDSSSLCRLGLKFGAPLSEVRGLLKRANQLDVNVVGISFHCGSGCKDPSLFGDAIRRA
RWAFDVGAEEGFDFDLLDIGGGFEDNNFEQIASVLREAIDAHFPLDAQGKGVKVIAEPGR
YYVCRAFELATNIIARRAARDGTNDDASMLELAGVDDEEAKPITMYYINDGVYSSFNSTM
FDHQVVHPHVLTLAGDFHDGPILSPDADFEECSIWGPTCDSIDCVQPKAVLPTNLIEVGD
WLRWDNMGAYTICAASQFNGFRRSDVRYTIDAKGEPGLEAKIRALLDA