Protein Info for mRNA_4268 in Rhodosporidium toruloides IFO0880

Name: 12636
Annotation: K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 TIGR00280: ribosomal protein eL43" amino acids 1 to 91 (91 residues), 117.7 bits, see alignment E=1.1e-38 PF01780: Ribosomal_L37ae" amino acids 4 to 88 (85 residues), 135 bits, see alignment E=3.9e-44

Best Hits

Swiss-Prot: 74% identical to RL37A_DICDI: 60S ribosomal protein L37a (rpl37A) from Dictyostelium discoideum

KEGG orthology group: K02921, large subunit ribosomal protein L37Ae (inferred from 86% identity to lbc:LACBIDRAFT_188072)

Predicted SEED Role

"LSU ribosomal protein L37Ae" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>mRNA_4268 K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae (Rhodosporidium toruloides IFO0880)
MTKRTRKVGVTGKYGVRYGATLRKSIKKMEITQHATYTCTFCGKDSVKRTAVGIWHCKAC
KKTTAGGAWTVSTTAAATVRSTVRRLRELAEV