Protein Info for mRNA_4271 in Rhodosporidium toruloides IFO0880

Name: 12639
Annotation: K01196 AGL glycogen debranching enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1598 PF14699: hGDE_N" amino acids 78 to 164 (87 residues), 79.1 bits, see alignment 4.5e-26 PF14701: hDGE_amylase" amino acids 195 to 639 (445 residues), 555.6 bits, see alignment E=2e-170 PF14702: hGDE_central" amino acids 791 to 1034 (244 residues), 265.7 bits, see alignment E=9.9e-83 PF06202: GDE_C" amino acids 1107 to 1581 (475 residues), 388.6 bits, see alignment E=6.1e-120

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1598 amino acids)

>mRNA_4271 K01196 AGL glycogen debranching enzyme (Rhodosporidium toruloides IFO0880)
MPALKHALETAASALTGAPTTATKPADSLAHPRHPASTVNGSDAGEVTVYAVVLEDNGDP
KHGKTLLRLPPPSKPYVLRITIDAGTKASRNGVLHTNFPLDGGKFEREKYAKVTLPQDFS
KPFEIDLPITSAGAFSYFVEFDSASGERTRSQPGYFVVDPVLSLPPRTSILDPSTHAVLP
LGKGGVVQSSASPITLPLDGLVIQTVIAKWMGTLEEWKPHLDLMRDRGYNMIHYTPLQQR
GESNSPYSIYEQNEFSEDLFGGKKKGREEKEKEMRSMLGRIKKEWGMLGMIDVVLNHTAN
NSKWLEEHPEAGYSVHSSPHLAGALELDDALLSLSSNLSSLGLPTKLTSTSDLDAIMSHI
EHSLLPSLKLYEFYALDVASLKAAFREAWVSPAVKKDSVPPPQGSKDLTSLSVEDRALKF
AQLCLPPTWSQLGHRFHAQLDLPASIAFVAQHLGIQPGQSTADQAADEVAKMLDVLNVDR
YREYDGDVKAILENTRNRVKYTRLDEHGPKKGEISASSPLVESLFTRLPKNSTTSSHDPS
LLALANNGWIWDADPLLDFASPGSRTYIRRDLIVWGDCVKLRYGSSPASNPWLWEHMSLY
VESLAGMFDGFRLDNSHSTPIHVGEYLMDKARKVNPNLYVCAELFTGRQELDLLWVCRLG
INSLIREAYNANSPKEESGLLYGFGLGKPIGSMDTDCLSERTTVSFSGVERPAKLIPHPG
STPHAFLMDITHDNESPLSKRTAEDALPTGALVTFARAAVGSNRGFDDLYPKLLDVVGET
RKYEVVKANDGIGEVKRLLNHLHTELVLDEGVEGHFSQEGEYVTAHRVNPVTHKGYLLVA
RTAFSSGDGKDKGDALTMRLDGTRVKFIAGATVNVNSTASRDTETTLRGLDATISHIKAA
DPAVEKDPSTGQTFSVITVPDEFPRGSVMVFATWMDDLPADLDDVCASGAKQAFGELNTV
DLNVVLYRADGEERDATGGDGVYSLPDTGALVYCGLQGWMPHLRHIMEHNDLGHPLCANL
RNGTWALDYVVDRLEKQTDVFPALAKPAAWFRERFDLIKAHVPPFLRPKYFALVINVAFK
AARDRAVDLCSPLIRNGTSFVHQLALTSVQMYGQVRSASLDAKKPTPSLAAGLPHFTAGW
ARTWGRDVFISLRGLFLVTGQFDAAREHILAFCSVLKHGLIPNLLDSGRTPRYNSRDSPW
FMLQNIQDYVNTAPNGLDILQATVKRRFPLDDTWVPFDDERAYATTSTVADVIQEILQRH
ASGIHFREYNAGPNLDMQMSDKGFDIDIDVDWKTGVIYGGNEHNCGTWQDKMGESTKAGT
KGVPGTPRDGAPVEITGLHKSAVRWLADLSSKGKFPHKGVKATVDGKEREVSYKEWNDLL
QQNFERLYYVPADPSLDAKYDVDPSLIARRGVYKDVHGTPAPRSRADYQLRGNFPIAMAV
APELFTPKFALDALAVLEANLVGPLGVKTLDPADPDYRPHYDNSNDSDDWHVAKGRNYHQ
GPEWVWPMGYFLRAHLIFDTLAGAGRSDPTSTFHHIYEILSRHRAHITHDPWAGLPELTN
ENGGYCHDSCRTQAWSGSTLLDTLDDMAKLAAGKKARN