Protein Info for mRNA_4277 in Rhodosporidium toruloides IFO0880

Name: 12645
Annotation: K08773 RALBP1 RalA-binding protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 1113 to 1131 (19 residues), see Phobius details PF00787: PX" amino acids 506 to 612 (107 residues), 27.1 bits, see alignment E=5.5e-10 PF00169: PH" amino acids 627 to 726 (100 residues), 47.8 bits, see alignment E=2.8e-16 PF00620: RhoGAP" amino acids 975 to 1123 (149 residues), 141.8 bits, see alignment E=2.4e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1267 amino acids)

>mRNA_4277 K08773 RALBP1 RalA-binding protein 1 (Rhodosporidium toruloides IFO0880)
MSSPPPPLTLSALLAEHSDDPHAALSTLLGRFNRLLSDYSVLRQEKENAERSAERSAVEN
QQLWRSLKAMTGSSSPRPPVRGESSLPSRQNSEGGSTVKGLGIGGSGDSTPASRGLRRGL
SSESNPARLDLPNSSSASSSHNSSPRFGPSSSNSIDFEPSTPAGMSSDQDRSPRLASNYH
FPSSSSPLRAKAATPPPNGSPRHMHRDEPIGASGLRKASSLDLGRGSPPEPDAEPTENSP
SSLVAPSVHMTLPDDYSAAEPKTPPPPSINGPLDRSLLLNRRRQSSPRISGSASMPMIAN
SEAAGGNRFLPSIQPVSPFFNPSPRSGEREEPMPTGSTAGEQLQQQLQGGASVPKRDRTF
SAASAASLPLGSAFDAGQQQQREQYLLPTRSPSTNITSSSSSSHLAESALPRERERRPCA
PASKLSQTRSAGDSSGDTYPTNFSAPVSRRPSGTAPLPALPSHEDVPLPPPPPATPPVRP
VLTPSLLPFARVRIASSNIRMNEKHKEVISFVIEVELSLPSSPSDIDGPAGSTVRWRVEK
LYSDILALDSAVKNKTNKQETKNMTSLPDKSLFKDHAPHKSDQRKAVLERYLQTLVSLPL
RDRSAVCAFLNSDIASEPPSATSSGPMAGWLTKRGRAFGGWQTRYYVLTPGSALTYYDAP
GGNKLGEIPLHSATIGRQSSRSTDPGEDAYLHAFLIRTKDEKEQEADHILCAENDDIRDA
WVVALTTLRPKGGSAKANGSEKEKERGPTSSGSATPIPTVVSPEPEPSTGKERRRSGSGP
SSVGGSEQQSAAQDPRNLSARSAGDLPPSYSLPSNLDAFARGMPALDAASNRGIGTIPED
GPVTREPSSSRAGTTKLQAPPSRRPAAQNERPLSPDRRGEAQQPPTTPSQQHATKYSASD
VSGPMNAVPLPSGYDFKKIERQKKTKSSFWNFASRNSSDKGSPGQSAAAPARPVFGVPLK
EAVAISRIRPGLELPAIVYRCVEYLEAKNAEHEEGIFRLSGSANVIRLLKDRFNAEGDVN
LLQSTEYYDPHAIAGLLKQYLRELPVHLLTRELHGDFLRVIDLRNRRDRVNALGKLVAQL
PIEEYTLFRFFFAHLCLIAQNAETSKMNLRNLGIVFSPTLAIPAPLFSLFLSEFDLVFAV
ESETGTAKPITLEDETTEDTTAPQERRTTNRNSQIYEASGANKLMESELRRLKENDEEEA
AGDLPDESDAPEDTTRIVSPTDGDVTSSTTYGPHYSNYVNPSLANLPAPPRSPGLPASPR
PGATFQT