Protein Info for mRNA_4283 in Rhodosporidium toruloides IFO0880

Name: 12651
Annotation: KOG2383 Predicted ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 829 PF03969: AFG1_ATPase" amino acids 153 to 386 (234 residues), 116.1 bits, see alignment E=8.6e-38 amino acids 418 to 528 (111 residues), 84.4 bits, see alignment E=3.8e-28

Best Hits

Predicted SEED Role

"ATPase, AFG1 family" in subsystem Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (829 amino acids)

>mRNA_4283 KOG2383 Predicted ATPase (Rhodosporidium toruloides IFO0880)
MQVLRRAGHTPRLPSPPLRSLLSHSHRALSATAPSRAAATGVEVADPLLLYYSLVAQGKI
KKDEEQLRALVQMRKLHGELLDYHPPVQLFTLLDSIRALPSASSSSTTVSSSSLLPAWPF
RRSPLSSLGEGLSEQDERERMRLATMSEREKTTQLVKVLKANEGLEDLDTPKGFLLTGPP
GTGKSLLMDLFFQSLPVASKTRHHYHAFLLWIYQGVHRALEKQRLENEEEEWLMNELYQS
SGKKGYPWSRREEMKAKAISQGWQSVFAGGRSAHDASLNTREFVLAQVALDLLKTQGWLL
AFDEIQLVDIAGAGLVSRVMSWYWRLGGVVVGTSNRVPEDLYKQGIQRATLSPFLTALSH
RAPVIDLSSPTDYRLVARSQTPVSPSTDADQPGNFGSVEAWRRWGTRSRGWFVKGEDEAA
WREALKWVVGDAEGGETVLTVYGRKVKVPWASGGVARFSFKDLCEKPLGPADYISIGSAF
HTVIIDDVPILPLSAKNEARRLITLLDALYETKTRLLAFADSPIDSLFFPDAISSTPPPP
PADISVDDLPTSFSEFAGSQAPGSSGPVHVLDASTFSLPLNSSLTRAGKADQRQAQDAAG
EVVDSLTEEMLGDVAQDLEAPYRPNISSYDESAQVSAYERDAARALEEQDEQVRRQLKKR
MEQEARAPIHPSAATPSFQSLAIFTGEEERFAFKRAVSRVHEMSSAEYLVTAEHSPLPSA
VRTWEQTVSSSSASLAAQAAAASASPSRHTVGDKAPLPADDRLSGVLDPSDLRAKWPEGL
PAGDKEVDVRRQEKPVLSEAHVWGVREDWGKKAGRWGKGARAYEEEREK