Protein Info for mRNA_4284 in Rhodosporidium toruloides IFO0880

Name: 12652
Annotation: KOG2806 Chitinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 67 to 89 (23 residues), see Phobius details PF00704: Glyco_hydro_18" amino acids 235 to 540 (306 residues), 154.5 bits, see alignment E=3e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_4284 KOG2806 Chitinase (Rhodosporidium toruloides IFO0880)
MGHSRHSRHYDSDTSTDSDDTTPTESSDSSEEEERPRRRRKRHHHGYDDDRRGLISKRSS
HDSNNNMLWLGVGLFVLLAALGVGGYYWWTHRDGTSSSFLGGTGASSGTGGTGGTGGTGS
GATDDGSGVGAGAGSTGGATGGDATDTGGGTDSPTAAASGTAGVTGGGSPSSGGAAAPSG
SGSATASAPASNSTGATTGASTGGGKGQILGFWENWKGMSIADTKFSSYQYCVWFVAVPG
TAAEKGALTMGEGAVKAKDWAAAATKAGCKPILSIGGWSGSNTFSGLMATDTSRSDFVNT
ISAALDANGFVGADLDWEYPGKAGATNDFDTKNDLNNFLTFLKALRAKIGKDKIISADTS
AGVWVGSDGQPSKDLSAFAAVLDFITIMTYDSVTYSAKVTGPNFALDSSCAPTTNQFAIP
STVKAWIDAKFPANKIMLGLASYGYAWKVANFQTNGVSGAKSPIYQDASGTLSATDGSVD
YDTNVSKNIPSMQRTYDNCTSTPFLYSKDTQLFIAYDDETSFAAKGGYAGTNGLMGCSIY
AGMTQNKDGKLAAAAKKVC