Protein Info for mRNA_4287 in Rhodosporidium toruloides IFO0880

Name: 12655
Annotation: K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 882 PF04006: Mpp10" amino acids 159 to 435 (277 residues), 68.3 bits, see alignment E=2.7e-23 amino acids 462 to 854 (393 residues), 303.5 bits, see alignment E=1.6e-94

Best Hits

Predicted SEED Role

"RNA polymerase sigma factor RpoD" in subsystem Flagellum or Macromolecular synthesis operon or Transcription factors cyanobacterial RpoD-like sigma factors or Transcription initiation, bacterial sigma factors

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (882 amino acids)

>mRNA_4287 K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10 (Rhodosporidium toruloides IFO0880)
MPGVKASPKKSPSPSKKRKGKQRATTADASSPASSTRSHNATDSPAPKNTTSASPMENGK
RAKKEQRQEEDENELLSLAERIAESAHLLVQGRGSDELAQEARDVVKRSFDKALASESLS
FPHLSTLLASLSPAAGPSTRSRSAASFADDEPSFSLVPTPISELTTDGMDAEMIWEQMEL
RGQTVNGLMEEMFGQGEEDEGEEGEGGFGSDEEDEGEEGEFGQDFEDEDEMEDGSDGEDD
EDIDFDDLPEAAKEEYYRRLGEGDEEEETEDEEGEGEERQEPQADPLTDETSGLTLDNFD
GDRKGKKRRTERASGPKSEVDDAFFSLSDFHREADEGEYEMAKMLRGEVPSDDDDEEDED
GSGGIDLFAPVGGMGDVDDEEDEEEGDLDAGGVMFKDFFDPPSRPPPRGKKPSLAGKKEK
AAPTAGEDAIEEKKEKKRGVRFSESVKVKEIPHRLAGKKRRSGDDDEEDEDEEGVEMLRD
LVDGDEAEEDEEDFDGEMDGFEDDEGESMSLDAEDDEEAEDGEGLDEEEEGSAEGEDEDD
ILEDEQTMQRFKSELFDDEEPEDDKTKNMSRHERRLLQLSSQIAALEQENVGPKDWTLIG
EAQSKQRPVNSLLDEDLEFERMGKVAPVITEETTKSIEDLIKKRILDNQFDDVERRVAVD
PNQFLPSRFMELQDTKSQKSLAEVYEDEFREKREKEEGREVVHELDKDLQKRHDEIEALF
EDLAARLDALSNARFTPKAPKAAITTVTNLPSISVESALPTASSTTTLLAPEEIYSAKGA
QSALTIDAADLTPAQKKAQRQKQRKDRKAVAEKTERILASQRRKKGARGEKEAAEEKLLG
TRGVTVIGKGGAEKKAAGKKRKRGVADGLGGAGAQSSVGLKL