Protein Info for mRNA_4295 in Rhodosporidium toruloides IFO0880

Name: 12663
Annotation: K15454 PUS9 tRNA pseudouridine synthase 9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 TIGR00005: pseudouridine synthase, RluA family" amino acids 67 to 321 (255 residues), 209.3 bits, see alignment E=3.9e-66 PF00849: PseudoU_synth_2" amino acids 148 to 300 (153 residues), 85.2 bits, see alignment E=2.8e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>mRNA_4295 K15454 PUS9 tRNA pseudouridine synthase 9 (Rhodosporidium toruloides IFO0880)
MGNPTSTAETRAKAGKVGKGEKGTSRKEIPPPSGAFALPPPKPEYFEENGLRKVKPYMFA
FQSFAKERWQGRTVLDIYSEFRDRTIEYYQWAIETGVIVVNNQKTTPDYVLRNGDLISNV
LHRHEPPVVAGPIRIIYDGRLPGNDGETLVVEKPGSMPVHPTGRYNFNTLLEILKYDYGL
PLVHTSNRLDRLTSGVMVCALTAEASKKLGAWFGGRRNHEGGVSKEYVARCLGKFPDGEI
VCEEPLLTIDRQIGVNVVHPDGRDSKTIFRRMSYDERSNTSVVHCRPITGRSHQIRVHLQ
FLGHPIANDPIYQNRAAWGDEGGKGGVFGKDRGGTEEDREERRRRGQRVLAREVERVKEE
GGLVEKGGEESDVAEPPRPRYNASGDLHSDLARAKRVQPDSPAHDDIASGSTAAEDALTD
GAKRAIAALREVKDEADGFARERDLEAVERARRSERNLMSIDADPEVVGAAAEEDGAEGA
GEADGFCSTCFTPLHPDPKPEALFIWLHAMRYKTIDWDWSSELPYWAEETYEVPLSSILA