Protein Info for mRNA_4297 in Rhodosporidium toruloides IFO0880

Name: 12665
Annotation: K01166 E3.1.27.1 ribonuclease T2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00445: Ribonuclease_T2" amino acids 81 to 255 (175 residues), 144.5 bits, see alignment E=2.3e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>mRNA_4297 K01166 E3.1.27.1 ribonuclease T2 (Rhodosporidium toruloides IFO0880)
MLQPALLAAATVALANLASADSSASSFPGLSGLLNAAEAQAHKFLGLNACPSPAFAPASC
ANGKPPAFPGLDPCCTNVPGGYFLSTQFWDSNPPTGPNDSWTLHGLWPDNCDGTFDQFCD
PSRQYTNIRSILAQNAPKQLLEYMDVYWKDYQGDDESFWAHEWDKHGTCISTLNTTCYGK
HYKQYEEVVDYFERAVELFRSLPTYDWLAADGIVPSTNQTYTLAQLQAVAKKHHGYEAIW
GCTKQGALDEVWYGYITKGPVNGGKFIPTSPDGSKSSCPDTGIHYYPKGYVPPATGGSTG
GSGNSTGGAFFNVFVNDTQNGCLISKGTWYTTGTCATYRLTPTASDLASGFTMTSSKGPC
AVLNDTLSCATGNTASTFTLDSDKYLSSGGSSTFYAQEVATGSVQEAVLTTSAPVSLKIQ
YAPQ