Protein Info for mRNA_4300 in Rhodosporidium toruloides IFO0880

Name: 12668
Annotation: K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 547 to 567 (21 residues), see Phobius details PF03663: Glyco_hydro_76" amino acids 168 to 496 (329 residues), 137.2 bits, see alignment E=5.6e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>mRNA_4300 K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase (Rhodosporidium toruloides IFO0880)
MGNRRRAPLLLAASSLVVLLGTRSTLALPSASPVESCPSTYDNPYLAFPHQPRHGHAFIP
SDPGNPVHPLLQDIRLPENPTNPAPRPVTAKDRHQLYTPGRNNSFRTDEFRFQPGRRAKS
DKDAKDEHGEVDKRDVVSSVDVPFPPSAWIDINDMSTIATLAQAAVARMQTWYENGVFEW
TGWWQTPVLGMAYTNLDLALGNQVNELLIKDLLIRNDGLGWMIDKYIDDQSWWAMFALRA
HQAYPNTTWLNMVETINNNNSLYWTDTCGGGVLWLTYKPMIKNTITNGLYFSILTRLYRY
TGNSTHFDYAMNTLNWWLSWSFDPANGRVYDTITADWQGQPMDQCTKTGEQTWTYNSGAF
LFGLADLFYATGNTKVLDLARSIAYAAMRDFTDHQTGILTESCEHDPPPGPGKPPGCQQD
ETVFKGIFLLGLAELYVARPDPNIYNFVNTQLLSNAFNNLDDTWLFGMWWGGPWNVTTAG
PKTQINALCLLSAAAMINADYLSAAGQKTAVPSVTDQIKVPESTATGEAGSTNRDGAVNA
AGRTREWAGATAVVALAMVVGGMGVLWA