Protein Info for mRNA_4306 in Rhodosporidium toruloides IFO0880

Name: 12674
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 654 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 132 to 153 (22 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 401 to 426 (26 residues), see Phobius details amino acids 444 to 463 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (654 amino acids)

>mRNA_4306 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MSALPFKTLDNSTVPAMLALLDSKFYPTPSPGLTARMGVLWALTGAFILLSLNYLYLHVK
HSKETPKWRSLWLARFVERPSGRFLVLNPRPTWIAVVISYGFYELFATGMFWRVYYLGRH
QDGWAGVRSYNGLALFIGGWCISWSGLQAFLLTTESNDSHLLPAWLANGLFIGGGAFLIL
LHIALAAYTTVLTEELLNRYYALHEALAALNSRLAGATPTIIDLLPIQTLFQPFERAAKR
LLTPNCVQYALIATLPLACLMVNIGGLALARKLRSQIKDSVSLLALQDTQHQGTQAAVSQ
NVLAEDFAFSDPVRRPSDFDTHSGVHRMVSIPLTNVITRTTDENKRKLSVGVASDDSGKR
KPSLTTNDVKLMARHGNTKGGTAARSQARKVLALQKATRDLIAVTVCIMFITLSLFGYCI
WVAWIAGTDRIYEGSWSVTEGSVMICQWIYAVFVCFAVGFLNYNAWMNGREWLADDVPNA
TTNGIGATTFGAGGAGETRPAMAATTEQRVSYISHFVEAGSAERPAPPPVDYPPLSPRTP
SPSAFGPTSKDQSPTTSASSAPSSTTRRHVVGERKPSATRFSLPRPHWPFLRQNSSDSIS
NGRRRGVGAAHGAGGSATASAIMVTVETDQVCDGDTCALWYNDQDKAERGESGR