Protein Info for mRNA_4308 in Rhodosporidium toruloides IFO0880

Name: 12676
Annotation: HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 77 to 98 (22 residues), see Phobius details PF03407: Nucleotid_trans" amino acids 178 to 384 (207 residues), 47.5 bits, see alignment E=1.2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (437 amino acids)

>mRNA_4308 HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407 (Rhodosporidium toruloides IFO0880)
MSRSAPRPDTEAHQLLETKSPHVGISLPASEDEQEDDEDATVFGSEVDDDDWLEGLNGHK
GRLRILRDSWADQARRPLVVGVAVAVLFLLAILITAPANPRSRQVLSSPSRWSLPFRKPP
RVQRDPKVSLASYLDSHFGRKKGTEGETVVMWTMATGSYVPQARNWDLKRAELEMEDAVV
VLCLDAECLDECEQGGLRAYGGYLREFVDLPPETSGRMREKRGAERGHFMAFLKFKAMLE
MAQSGFPSLFFEGDTFLTTNPFPHMLPLSSPTWDLQFTEDVGYIVNFGWIFARPSEGTIK
LFQAAFDAYVAHNEWDQLLLSNTIIKEGGKEWRGEKGDEHWWIVELLGTRINMLPLDKFQ
ATHPVMLEWYKPDPNAPEPVMNHLTAFFFPDSRTLPEQRIDSSIQKNAAGQPTSTPSTPT
LDPSSPPRQSPPPSNQS