Protein Info for mRNA_4320 in Rhodosporidium toruloides IFO0880

Name: 12688
Annotation: K03255 TIF31, CLU1 protein TIF31

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1530 PF13236: CLU" amino acids 474 to 755 (282 residues), 245.5 bits, see alignment E=1.2e-76 PF12807: eIF3_p135" amino acids 912 to 1088 (177 residues), 144.4 bits, see alignment E=8.1e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1530 amino acids)

>mRNA_4320 K03255 TIF31, CLU1 protein TIF31 (Rhodosporidium toruloides IFO0880)
MASPSTDAAASAPDAEIQQLQAGDAVGAEQADQASEPAAVEVTLLVPSQQFLSLSTSPAK
KTADGLLELPLPIALSDAIHDLRTIITDAPEGFWLGAFSLTPCYAEEVEGSEAKEGEEQA
KQFGEWKALSPPERKPLAAGEVDPTAWSLTKEGVLGDFADLTAVFGAEPEFWEGKKRGLK
VTFTPYSSASMHHHILKVRDVLFSNLPPFASIPTNYDPTAFSIGAGSTLYASVCGKNEAE
QEKAVSQEEEQDEKAAKGKKGKASKKAEKVAAEPASTSSPAQAESSTHPFSGWTVDDLKA
DNYLTHLSSASSLAATSPCLKSLGVSPWSPPPHPRRLRGDLVYLTIQTLESEQYTVTGAT
NGFWVSKSTNATFDPSPRAVLPKGVRAGAYHSLFELFADISPSFRKNLSSLIAKSSRTDL
SQSDLVGSLAITHTIPAAPYLVKAPQHVADPFRTQAAYLLTSSTTADQLPAARDWNDEFA
QFLDLPRSNVNERLLRERLICRTQADFVAAATRGAMAIARGDVQPLNPNEAPAAHTFIHN
NLLYTKAEDATGMHTHLGGDEASRYAAGKDLRGIEILERLDIDGLSVMQTALVDFRGTRW
ICQSLIPGLFKTARDGEAEVSLAGDEKGEKVPTTYPAGDESAKEAAKKAIESDKPFPSET
TPNKDDYPPTSAFRIVYGAADPEKPDSKVRASAYFHETLAKKVAKQMRFAEHDVKNEEGK
VTRLYTASDMHGIAATDGRSYFIDCSRMQCVDVEFLEKNVKADDSTSADYPHRVVLLRPE
LLEAYRESKLQKWLEVKVAETRAKVEEEQKSVEAELKEAASTETPAEGEEASKDGEAKPA
KAPTTSVINADDFVLNFNPDAFVERKPTESGEQLVIYDPEDESTKNVRLASQYLRDVVLD
EFLVEAAANTFIVTDGFLITKTLHRKGINMRYLGLLVDKIDKGADKIEVGKSTTKEEAAF
TLSLLKGTLQHEMVIRAAKHILNRLLRTAEAYDEAAIISHFYNCLLGAAFNSSPVAEPID
LPLGSQVDRSWTDLSPASLRADLVKEVATRFRYQLSETWFDEQMLNNKVARELSLRVGVQ
LVARKYEFTGAQAESAEPHVNGVSASSDSEPAASTSKKGKKSKKAKAAVEEKPKARGAPT
TFTPEDVLNVGPVVKSTNHRSSLVEETFYQGQRAIADGHAEVGEAVCNDALHICEQIFGP
VHAEGADKFHALGIMWHNLAQRVLNTVRTHELAASALADLSPAEREQHEKQIQELLVPDV
EQARAEAEAYLQQAVRLVRQSIVISERTNGVDSADAITQFSDLGLLEQAAGNSELAFTLT
KHAMNLYVAAYGPKHPQLVTLLNNAAAMVQAKFGAEAAIPLQQETRKLAELVYGAESVAV
GQAEYTLGQSFAMSQDLPSALEHMKHAKEILSKHLAEGAKEITEATQFIQMVEAAVAHEA
REQAAREERLKKALPAVGGGRRIGGARLPGASASTSPLSGVLRQQVNGASTSTQRQRTHG
EKADLSVDDLVNYIQGSSSSSKSRKRKTSP